RetrogeneDB ID: | retro_mmus_1133 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:94754204..94754593(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps15a | ||
Ensembl ID: | ENSMUSG00000008683 | ||
Aliases: | Rps15a, A630031B11Rik | ||
Description: | ribosomal protein S15A [Source:MGI Symbol;Acc:MGI:2389091] |
Percent Identity: | 63.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
MV.M.VL...LKSI...E.R...Q.LI..C.KVI..F.TVMM.HGY.GEFEI.DD..AG...VNLTGR.N | |
Retrocopy | MVHMTVLLNGLKSIHSFEERTHLQGLI*RCYKVIMQFSTVMMTHGYTGEFEIMDDYSAGEVTVNLTGRMN |
Parental | KCGVISPRFDVQLKDLEKWQNNLLPSRQFG-FIVLTTSAGIMDHEEARRKHTGGKILGFFF |
KCGV.SP.FD.QL...E..QNNLLPS.Q...FIVL...AGI..H.EAR.KHTGGKILGF.F | |
Retrocopy | KCGVVSPIFDIQLRHPEQQQNNLLPSYQLF<FIVLVILAGIVGHKEAR*KHTGGKILGFVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 97 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 80 .50 RPM |
SRP007412_heart | 0 .00 RPM | 56 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 53 .23 RPM |
SRP007412_liver | 0 .00 RPM | 40 .94 RPM |
SRP007412_testis | 0 .00 RPM | 60 .70 RPM |