RetrogeneDB ID: | retro_fcat_879 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:1871552..1871942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSFCAG00000010625 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 59.54 % |
Parental protein coverage: | 97.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHVGYIGEFEIIDDHRAGKIVVNLTG- |
..VRM.V.ADAL.SI..AEKRG.RQVL.R.CS.V.VRF....M.H.GY.GE....D.HRAGK...N.TG. | |
Retrocopy | VRVRMTVPADALRSITDAEKRGRRQVLTRSCSEVSVRFPALVMEH-GYTGELGVTDAHRAGKTAGNPTGS |
Parental | RLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF |
R.N..GV..PR..V.L.DLEK..N.L.P..Q.GF..LT.SAGI.DHEEA.RK..G.KILGF | |
Retrocopy | R*NTYGVSRPRSAVRLQDLEKPRNRLAPFHQSGFVGLTASAGITDHEEAGRKQAGRKILGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 191 .17 RPM |
SRP017611_liver | 0 .00 RPM | 117 .37 RPM |