RetrogeneDB ID: | retro_fcat_1966 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:17758726..17759115(-) | ||
Located in intron of: | ENSFCAG00000002434 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSFCAG00000010625 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 66.91 % |
Parental protein coverage: | 98.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | IMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFL-TVMMKHVGYIGEFE-IIDDHRAGK-IVV-N |
..VRMN..A.AL.S.NNAE.RG..QVLIRPCSKVIV.FL....MKH.GYIG..E..ID....GK.IVV.. | |
Retrocopy | VTVRMNIQAVALESSNNAEERGRQQVLIRPCSKVIVGFL<SWEMKH-GYIGKSE<TIDVTELGK<IVV<D |
Parental | LTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
LTGRLNK....SPR..VQ.KDLEK..NNLLPS.QFGFIVLTTS.GI...EE.R.K.T.GKILGFFF | |
Retrocopy | LTGRLNKYRMTSPRSGVQRKDLEKC*NNLLPSYQFGFIVLTTSVGIVEQEETR*KSTRGKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 37 .65 RPM |
SRP017611_kidney | 0 .21 RPM | 191 .17 RPM |
SRP017611_liver | 0 .20 RPM | 117 .37 RPM |