>retro_ggor_1826
GAAAGGAAGATAGTCTATTCTGAAATGATTAACAACAATGTGATTGTGAGGAACGCAGAGGACATTGAGCCGCTCTGTGG
GGAAGGTTCTTTTGGAAAAGGTATTCTTTCAAGAAGCTGTCCAACCATCACAGTTTCAGATCCTAAATTGGTTGCTAAAT
GGAAAGATATGAAGACAAACATGCCTATCATCACGTCAAAGAAGTATCAGCGTAGTGTTGAGTGGGTGGCAGAGCTGATG
CGTAGACAGGGACAGGATGAGAGTGCAGTGCGCAGAATCCTCAAGGATTACTTGAATCCGCTTGAGCATCGCCCTGTGAA
AAGGAATGAACAGGTTCAAATGCATGATGAGCTTAACTCTGGAATGGTCTCCAACATGGAAGGCACAGCGGTAGGAGAGA
GACCTTCTATGATAAACGGGGACTCTGGAAAGTCAGTTGTTATGGGTGATCCCAGTGAGCCATTAGGCTGCCTGCAGGAG
GGCTCTGGGAGCGACCCACCAACAGAAGGCTTTGAGGAAAGCGTGGGAGAGGACGCTTCACCTCTGCCCCAAGCATGTTA
CTGCAAACACGATGCTCTCGTCCTCCAGTCTGGCTCTCACCGTGAGGACAGCAGCCAGCATTTTGGTCTCCTGCATGCTG
GGGACAGAGGGCCTGACCAGTACGTGCTGGTGCAGGAAGCCGAGTGTGCCGTGAGCGAGAGGAAGGATGCCCCAAATGAG
GAATTGGTGCAAAGAAAGAGACTAATCTGCAGAAGAAATCCATATAGGATCTTTTGAGTATTTGCAGCTCAGCCTAGAAG
AGGTCTTCTTCCTGGTCTATGCTCTGGAATGTTTAAGTATTTGCTATGAGAAGGAGCCTTTAACGATAGCGAAGCTCTGG
AAAACTTTCACTGTAGTTCAGCTTACCTTCAGGACCACCTACATGGCCTACCATTGCTTGCCAAGCAATGGCTAGTGCCC
AAAGTGGGGCTCAAGTACGGGATAGATTTACTGCTATATTGGAAAGGCCCTCCGTTTTATCATGCAAGCTATTCTGTCGT
TATTGAGCTAGTTGATGAGCAGTTTGAAGGCTGTCTCTGCAGTCCCTTCAGTTGGATGTCCCTGGCTGCCTTGAGCAGAG
TTTCCGTTAATGTCTTCAAGGAACTCATGCTGTGCTGTTTCATTAAACCCTCTACTATGACTGACAAGGAAACGGAGTCA
CCAGAATGTATGAAAAAAATTAGAGTTCAGGAGGTGATTGTGAGTTGATGGGTGTCTTCACAAGAGAGGAGTGACCAAGA
CAAACTT
ORF - retro_ggor_1826 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.85 % |
Parental protein coverage: |
92.47 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | EFKIFHAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQ |
| E.KI...EMINNNVIVRNAEDIE.L.G.G.FGKGILSRS.P..T.SDPKLVAKWKDMKTNMPIITSK.YQ |
Retrocopy | ERKIVYSEMINNNVIVRNAEDIEPLCGEGSFGKGILSRSCPTITVSDPKLVAKWKDMKTNMPIITSKKYQ |
|
Parental | HSVEWAAELMRRQGQDESTVHRILKDYTKPLEHPPVKRNEEAQVHDELNSGMVSNMEGPAGGERPSVVNG |
| .SVEW.AELMRRQGQDES.V.RILKDY..PLEH.PVKRNE..Q.HDELNSGMVSNMEG.A.GERPS..NG |
Retrocopy | RSVEWVAELMRRQGQDESAVRRILKDYLNPLEHRPVKRNEQVQMHDELNSGMVSNMEGTAVGERPSMING |
|
Parental | DSGKSGGVGDPREPLGCLQEGSGCHPTTESLEKSVREDASPLPHVFCCKQDALILQRGLHHEDGRQHIGL |
| DSGKS...GDP.EPLGCLQEGSG..P.TE..E.SV.EDASPLP....CK.DAL.LQ.G.H.ED..QH.GL |
Retrocopy | DSGKSVVMGDPSEPLGCLQEGSGSDPPTEGFEESVGEDASPLPQACYCKHDALVLQSGSHREDSSQHFGL |
|
Parental | LHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVRRNRLICRRNPYRI-FEYLQLSLEEAFFLVYALGCL |
| LH.GDRGPD..YVLV.EAECA.SER..APNEELV.R.RLICRRNPYRI.FEYLQLSLEE.FFLVYAL.CL |
Retrocopy | LHAGDRGPD-QYVLVQEAECAVSERKDAPNEELVQRKRLICRRNPYRI>FEYLQLSLEEVFFLVYALECL |
|
Parental | SIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKG-WVPKVGLKYGTDLYLFLVGQIFFLNSYSVI |
| SI.YEKEPLTI.KLWK.FTVVQ.TFRTTYMAYH...S.G..VPKVGLKYG.DL.L...G..F...SYSV. |
Retrocopy | SICYEKEPLTIAKLWKTFTVVQLTFRTTYMAYHCLPSNG<LVPKVGLKYGIDLLLYWKGPPFYHASYSVV |
|
Parental | IELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRW |
| IELVD..FEG.L..P.SW.SLAALSRVSVNV.KELMLC..IKPSTMTDKE.ESPECMK.I.VQEVI.S.W |
Retrocopy | IELVDEQFEGCLCSPFSWMSLAALSRVSVNVFKELMLCCFIKPSTMTDKETESPECMKKIRVQEVIVS*W |
|
Parental | VSSRERSDQDDL |
| VSS.ERSDQD.L |
Retrocopy | VSSQERSDQDKL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
13 .91 RPM |
SRP007412_cerebellum |
0 .04 RPM |
14 .07 RPM |
SRP007412_heart |
0 .00 RPM |
5 .50 RPM |
SRP007412_kidney |
0 .00 RPM |
9 .00 RPM |
SRP007412_liver |
0 .03 RPM |
6 .15 RPM |
SRP007412_testis |
0 .00 RPM |
17 .92 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1826 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1826 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.