RetrogeneDB ID: | retro_mmul_1925 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:167582076..167583047(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN2 | ||
Ensembl ID: | ENSMMUG00000007195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.58 % |
Parental protein coverage: | 70.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ESTVCRILKDYTKPLEHPPVKRNEEAQVYDELNSGMVSNMEGTARGERPSVVNGDSGKSGGMGDPSEPLG |
ESTV.RILKDY.KPLE.P..KRNE.AQ..D..NSGMVSNMEGTA.GERPSV.NGDSGKSG.MGDPSE..G | |
Retrocopy | ESTVRRILKDYMKPLERPSGKRNEQAQMHDRFNSGMVSNMEGTAVGERPSVINGDSGKSGVMGDPSESSG |
Parental | SLQEGSGCNPTTDGFEKSVRKDAAPLPQVCCCKQDALILQCGPHHEDGSQHVGLLHAGDRGPDHEYVLVE |
.LQEGSG..P.TDGFE.SV..DA.PLPQVC.C..DAL.L.CGP..ED.SQH.GLLH.GDRGPDHEY.LV. | |
Retrocopy | CLQEGSGHDPPTDGFEESVGEDASPLPQVCSCRHDALVLPCGPYREDSSQHFGLLHVGDRGPDHEYMLVQ |
Parental | EVECA-MSEREDAPNEELVQRN-RLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIYYEKEPLTIVKLW |
E.ECA..SER.DAPNEELVQR..R...R.NPYRIFEYL.LSLEEAFF.V.AL.CLSI.Y.KEPLTIVKLW | |
Retrocopy | EAECA<VSERKDAPNEELVQRD<RICRR-NPYRIFEYLRLSLEEAFFQVCALECLSICYDKEPLTIVKLW |
Parental | KAFTVVQPTFRTTYMAYHYFRSKGW-VPKVGLKYGTDLLLYRKGPPF-YHASYSVIIELVDDHFEGCLRR |
KAFTVVQPTFRTTYMAYHYF.SK.W.VPKV.LKYG.DLLL..KGPP..YHASYSVIIELVD.HFEG.L.R | |
Retrocopy | KAFTVVQPTFRTTYMAYHYFLSKSW<VPKVVLKYGMDLLLCWKGPPL<YHASYSVIIELVDEHFEGSLCR |
Parental | PFSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQE |
PFS..SL.ALSRVS.NVSKEL.LC..IK.STMTDKEMESPE.MKRI.V.E | |
Retrocopy | PFS*MSLTALSRVSINVSKELILCSFIKSSTMTDKEMESPEYMKRIRVHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .37 RPM |
SRP007412_heart | 0 .00 RPM | 7 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .44 RPM |
SRP007412_liver | 0 .00 RPM | 5 .86 RPM |
SRP007412_testis | 0 .00 RPM | 5 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3011 |
Pan troglodytes | retro_ptro_2035 |
Gorilla gorilla | retro_ggor_2085 |
Pongo abelii | retro_pabe_2495 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000154743 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012488 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016672 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007195 | 1 retrocopy |
retro_mmul_1925 ,
|
Pongo abelii | ENSPPYG00000013647 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014633 | 1 retrocopy |