RetrogeneDB ID: | retro_mmur_883 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_118804:98..1075(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN2 | ||
Ensembl ID: | ENSMICG00000016672 | ||
Aliases: | None | ||
Description: | tRNA splicing endonuclease 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28422] |
Percent Identity: | 89.91 % |
Parental protein coverage: | 69.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KTNMPIITSEK-YQHRVEWAAKLMCRQGQNESTVHRILEDYIKPLEYPHI-NRNEEVQLPDELNSEMVST |
KTN.PIITSEK.YQHRVEWAAKLM.RQGQNESTVHRILEDYIKPLEYPHI.NRNEEVQLPDELNSEMVST | |
Retrocopy | KTNVPIITSEK>YQHRVEWAAKLMRRQGQNESTVHRILEDYIKPLEYPHI>NRNEEVQLPDELNSEMVST |
Parental | MEGTARREKLSVMNGDSGQSDAMEDLSRPSGCPQEGSGRDPPTTGSYHNRVADEDAPPPQVCCCKPDAVI |
MEGTA.REKL.VMNGDSGQSDA.EDLS.PS.CPQEGSGRD.PTTGSYH.R.AD..APPPQVCCCK..AVI | |
Retrocopy | MEGTAGREKLCVMNGDSGQSDAIEDLSEPSDCPQEGSGRDLPTTGSYHDRMADDAAPPPQVCCCKAGAVI |
Parental | LQRGPHPEHGGKHACILCAGERGPDHEYVLVEEVVCDRNESEDAPNEELVQRKKLICRR-PYRIFEYLQL |
LQRGPHPEHGGKHAC.LCAGERGP.HEYVLVEEVVCDRNESEDAPNEELV.R.KLIC.R.PYRIFEYLQL | |
Retrocopy | LQRGPHPEHGGKHACVLCAGERGPNHEYVLVEEVVCDRNESEDAPNEELV*RQKLICKRNPYRIFEYLQL |
Parental | SLEEAFFLVYALGCLSIYYEKEPLTIMKLWKAFSVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLY |
SLEEAFFLVYALGCLSIYYEKEPLTI.KLWKAFS.V.P.FR.TYMAYHYFRSKGWVPKVGLKY.TDLLL. | |
Retrocopy | SLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFSIV*PMFRMTYMAYHYFRSKGWVPKVGLKYRTDLLLC |
Parental | RKGPPFYHASYSVIIELVDDNFEGSLRRPFSWKSLAALSRVSVNVSK |
RKG.PFYHA.YSVIIELVDD.FEGSL.RPFSWKSLAALSRVSVNVSK | |
Retrocopy | RKGLPFYHANYSVIIELVDDHFEGSLHRPFSWKSLAALSRVSVNVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000154743 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012488 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016672 | 1 retrocopy |
retro_mmur_883 ,
|
Macaca mulatta | ENSMMUG00000007195 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013647 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014633 | 1 retrocopy |