RetrogeneDB ID: | retro_ggor_196 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:88096745..88097435(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000012948 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA10 | ||
Ensembl ID: | ENSGGOG00000009788 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHG |
MNIRNARP.DLMNMQHCNLLCLPENYQMKYY.YHGLSWPQLSYIAEDE.GK.VGYVLAKMEE.PDDVPHG | |
Retrocopy | MNIRNARPDDLMNMQHCNLLCLPENYQMKYYLYHGLSWPQLSYIAEDEDGKTVGYVLAKMEEEPDDVPHG |
Parental | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD |
HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD | |
Retrocopy | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD |
Parental | GEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKVESKGNSPPSSGEACREEKGLAAEDSGGDSK |
GEDAYAMKRDL.QMADELRR...LK.KG..VVLG..EN..E..G.....S.EAC...K..A.E.SG.DSK | |
Retrocopy | GEDAYAMKRDLSQMADELRRQVDLK-KGGYVVLGSRENQ-ETQGSTLSDSEEAC-QQKNPATEESGSDSK |
Parental | DLSEVSETTESTDVKDSSEASDSAS |
...E.....EST.V.DSSE.SDS.S | |
Retrocopy | ---EPKQSVESTNVQDSSESSDSTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 26 .28 RPM |
SRP007412_cerebellum | 0 .04 RPM | 22 .89 RPM |
SRP007412_heart | 0 .00 RPM | 19 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .86 RPM |
SRP007412_liver | 0 .00 RPM | 17 .65 RPM |
SRP007412_testis | 6 .84 RPM | 9 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_13 |
Pan troglodytes | retro_ptro_23 |
Pongo abelii | retro_pabe_2530 |
Canis familiaris | retro_cfam_167 |