RetrogeneDB ID: | retro_mmul_21 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:50256875..50257565(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000021988 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA10 | ||
Ensembl ID: | ENSMMUG00000000322 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHG |
MNIRNARP.DLMNMQHCNLLCLPENYQMKYY.YHGLSWPQLSYIAEDE.GKIVGYVLAKMEEDPDDVPHG | |
Retrocopy | MNIRNARPDDLMNMQHCNLLCLPENYQMKYYLYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHG |
Parental | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD |
HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD | |
Retrocopy | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD |
Parental | GEDAYAMKRDLTQMADELRRHLELKEKGRHVVLGAIENKVESKGNSPPSSGEACREEKGLAAEDSGGDSK |
GEDAYAMKRDL.QMADELRR...LK.KG..VVLG..EN..E..G.....S.EAC...K....E.SG.DSK | |
Retrocopy | GEDAYAMKRDLSQMADELRRQVDLK-KGGYVVLGSRENQ-ETQGSTLCGSEEAC-QQKNPDTEESGSDSK |
Parental | DLSEVSETTESTDVKDSSEASDSAS |
...E..E..EST.V.DSSE.SDS.S | |
Retrocopy | ---EPKESVESTNVQDSSEGSDSTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 27 .12 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 51 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 29 .06 RPM |
SRP007412_heart | 0 .00 RPM | 33 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .45 RPM |
SRP007412_liver | 0 .00 RPM | 49 .52 RPM |
SRP007412_testis | 46 .55 RPM | 4 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_177 |
Callithrix jacchus | retro_cjac_132 |