RetrogeneDB ID: retro_ggor_2891

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: X:23638351..23638669(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C11ORF73
• Ensembl ID: ENSGGOG00000023168
• Aliases: None
• Description: None

Sequence

>retro_ggor_2891
GGAAGCCAACATCCTTTTGGAGCCATGAATACTGTCCAAACTCCATCTGTTGCTCAGATTGGAATTTCGGTGGAATCACT
GGACAGTATGGCTCAGCAGACTCCTGTAGGTAATGCTGCTCTATCCTCAGTTGACTCATTCACTCTGTTCACACAAAAGA
TGTTGGACAACTTACACAATTTTGCTTCATCGTTTGCTGTCTCTCAGGCCCAGATGACACCAAGCCTATATGAAACGTTC
ATTCTGCAAAATATGTTTCTGAAATGGTATGAAAACTTTCAAAGATGACTAGCACAGAACCCTCTCTTTTGGAAAACA

Alignment

ORF - retro_ggor_2891 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.85 %
• Parental protein coverage: 99.07 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GSQHPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQA
          GSQHPFGAMN.V.TPSVAQIGISVE.LDSMAQQTPVGNAA.SSVDSFT.FTQKMLDN..NFASSFAVSQA
Retrocopy GSQHPFGAMNTVQTPSVAQIGISVESLDSMAQQTPVGNAALSSVDSFTLFTQKMLDNLHNFASSFAVSQA

Parental  QMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT
          QMTPS..E.FI..N..LKWYENFQR.LAQNPLFWKT
Retrocopy QMTPSLYETFILQNMFLKWYENFQR*LAQNPLFWKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.10 RPM	4.51 RPM
SRP007412_cerebellum	0.16 RPM	4.49 RPM
SRP007412_heart	0.00 RPM	2.60 RPM
SRP007412_kidney	0.00 RPM	5.93 RPM
SRP007412_liver	0.00 RPM	5.12 RPM
SRP007412_testis	0.00 RPM	5.70 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2891 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2891 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_4658
Pan troglodytes	retro_ptro_3094

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000015605	1 retrocopy	retro_ecab_720,
Homo sapiens	ENSG00000149196	1 retrocopy	retro_hsap_4658,
Gorilla gorilla	ENSGGOG00000023168	1 retrocopy	retro_ggor_2891 ,
Myotis lucifugus	ENSMLUG00000016260	1 retrocopy	retro_mluc_784,
Mus musculus	ENSMUSG00000062797	1 retrocopy	retro_mmus_3722,
Nomascus leucogenys	ENSNLEG00000016224	1 retrocopy	retro_nleu_1095,
Oryctolagus cuniculus	ENSOCUG00000013108	2 retrocopies	retro_ocun_1147, retro_ocun_280,
Pongo abelii	ENSPPYG00000003746	1 retrocopy	retro_pabe_3618,
Pan troglodytes	ENSPTRG00000004144	1 retrocopy	retro_ptro_3094,
Tupaia belangeri	ENSTBEG00000009192	2 retrocopies	retro_tbel_1594, retro_tbel_3248,
Tursiops truncatus	ENSTTRG00000012267	1 retrocopy	retro_ttru_562,