RetrogeneDB ID: | retro_ocun_1147 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 20:23971135..23971704(-) | ||
Located in intron of: | ENSOCUG00000012416 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C11orf73 | ||
Ensembl ID: | ENSOCUG00000013108 | ||
Aliases: | None | ||
Description: | chromosome 11 open reading frame 73 [Source:HGNC Symbol;Acc:26938] |
Percent Identity: | 87.43 % |
Parental protein coverage: | 96.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGIPVWQLL |
MFGCLV..RLVQT.AQQVAEDKFVFDLP.YEN..HVVVFMLGTIPFPEGMGGSVYFSYPDS.GIPVW..L | |
Retrocopy | MFGCLVVVRLVQTVAQQVAEDKFVFDLPNYENMHHVVVFMLGTIPFPEGMGGSVYFSYPDSSGIPVW*FL |
Parental | GFVTNGKPSAIFKISGLKSGEGSQHPFGTMNIVRTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQ |
GFVTNGKP..IFKISGLKSGEGSQHP.G.MNIV.TPSVAQIGISVELLDSLAQQTP.GNAAVSSVDSFTQ | |
Retrocopy | GFVTNGKPNTIFKISGLKSGEGSQHPMGAMNIVQTPSVAQIGISVELLDSLAQQTPAGNAAVSSVDSFTQ |
Parental | FTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVL-KWYENFQRRLTQ |
F.QKMLDNF.NFASSFAVSQ.QMTP.PSEMFIPAN..L..WYENFQR.LTQ | |
Retrocopy | FKQKMLDNFCNFASSFAVSQVQMTPNPSEMFIPANADL<EWYENFQRKLTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .06 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .40 RPM |
SRP017611_liver | 0 .00 RPM | 5 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015605 | 1 retrocopy | |
Homo sapiens | ENSG00000149196 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023168 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016260 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062797 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016224 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013108 | 2 retrocopies |
retro_ocun_1147 , retro_ocun_280,
|
Pongo abelii | ENSPPYG00000003746 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004144 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009192 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000012267 | 1 retrocopy |