RetrogeneDB ID: | retro_mmus_3722 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:157650709..157651299(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081505 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | l7Rn6 | ||
Ensembl ID: | ENSMUSG00000062797 | ||
Aliases: | None | ||
Description: | lethal, Chr 7, Rinchik 6 [Source:MGI Symbol;Acc:MGI:96738] |
Percent Identity: | 89.9 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MFGCLVAGRLVQTAAQQVAEDKFV-FDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQL |
MFGCLV.GRLVQTAAQQVAEDKFV.FDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVP.WQL | |
Retrocopy | MFGCLVVGRLVQTAAQQVAEDKFV>FDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPMWQL |
Parental | LGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPV-GSAAVSSVDSF |
LGFVTNGKPSAIFKISGLK..E.SQHPFGAMNIV.TPSVA.IGISVE.LDSLAQQTPV.GSAA..SVDS. | |
Retrocopy | LGFVTNGKPSAIFKISGLKPTEESQHPFGAMNIVQTPSVARIGISVESLDSLAQQTPV>GSAAMPSVDSS |
Parental | TQFTQKMLDNFYNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWK |
.QFTQKMLDNFYNFAS.F.LSQ.QMTPNPSEMFIPAN..LKWYENFQR.LAQNPLFWK | |
Retrocopy | MQFTQKMLDNFYNFASLFLLSQIQMTPNPSEMFIPANAALKWYENFQRQLAQNPLFWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP007412_heart | 0 .00 RPM | 12 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .17 RPM |
SRP007412_liver | 0 .03 RPM | 10 .24 RPM |
SRP007412_testis | 0 .73 RPM | 4 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015605 | 1 retrocopy | |
Homo sapiens | ENSG00000149196 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023168 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016260 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062797 | 1 retrocopy |
retro_mmus_3722 ,
|
Nomascus leucogenys | ENSNLEG00000016224 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013108 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003746 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004144 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009192 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000012267 | 1 retrocopy |