RetrogeneDB ID: | retro_ptro_3094 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:23580283..23580721(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C11H11ORF73 | ||
Ensembl ID: | ENSPTRG00000004144 | ||
Aliases: | C11H11orf73, C11orf73 | ||
Description: | Pan troglodytes lethal, Chr 7, Rinchik 6 (C11H11orf73), mRNA. [Source:RefSeq mRNA;Acc:NM_001242569] |
Percent Identity: | 85.62 % |
Parental protein coverage: | 74.11 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSM |
GSVYFSYPDSNGMPV.QLL.FV.NGKPSAIFKISGLKSG.GSQHPFGAMN.V.TPSVAQIGI.V..LDSM | |
Retrocopy | GSVYFSYPDSNGMPV*QLL*FVMNGKPSAIFKISGLKSGGGSQHPFGAMNTVQTPSVAQIGILVKSLDSM |
Parental | AQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQN |
AQQTPVGNAA.SSVDSFT.FTQKMLDN..NFASSFAVSQAQMTPS..EMFI..N..LKWYENFQR.LAQN | |
Retrocopy | AQQTPVGNAALSSVDSFTLFTQKMLDNLHNFASSFAVSQAQMTPSLYEMFILQNMFLKWYENFQR*LAQN |
Parental | PLFWKT |
P.FWKT | |
Retrocopy | PVFWKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .10 RPM |
SRP007412_cerebellum | 0 .04 RPM | 8 .39 RPM |
SRP007412_heart | 0 .00 RPM | 13 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .61 RPM |
SRP007412_liver | 0 .00 RPM | 10 .18 RPM |
SRP007412_testis | 0 .00 RPM | 6 .64 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4658 |
Gorilla gorilla | retro_ggor_2891 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015605 | 1 retrocopy | |
Homo sapiens | ENSG00000149196 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023168 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016260 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062797 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016224 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013108 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003746 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004144 | 1 retrocopy |
retro_ptro_3094 ,
|
Tupaia belangeri | ENSTBEG00000009192 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000012267 | 1 retrocopy |