RetrogeneDB ID: | retro_ggor_342 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:200535609..200535857(+) | ||
Located in intron of: | ENSGGOG00000013163 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABARAPL2 | ||
Ensembl ID: | ENSGGOG00000012299 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.23 % |
Parental protein coverage: | 71.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MKWMFKEDHS-LEHRCVESAKIRAKYPDR-VPVIV-EKVS-GSQIVDIDKRKYLVPSDITVAQFMWIIRK |
.KW.F.E..S.LEHR.VES.KIR.K.P...VP.I..EKV..GSQ..D.DK.K.LVP..I.VAQ.M.II.. | |
Retrocopy | VKWVFRESRS<LEHR*VESPKIRTK*PSQ<VPAIM<EKVQ<GSQTTDPDK*KSLVPPGIPVAQSMRIITS |
Parental | RIQLPSEKAIFLFVDKTV |
RIQL..EKA...FVDKTV | |
Retrocopy | RIQLAAEKASVPFVDKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 105 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 89 .67 RPM |
SRP007412_heart | 0 .06 RPM | 26 .95 RPM |
SRP007412_kidney | 0 .08 RPM | 76 .99 RPM |
SRP007412_liver | 0 .00 RPM | 37 .19 RPM |
SRP007412_testis | 0 .00 RPM | 60 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_372 |
Macaca mulatta | retro_mmul_540 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005453 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000014253 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002240 | 2 retrocopies | |
Homo sapiens | ENSG00000034713 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012299 | 2 retrocopies |
retro_ggor_2761, retro_ggor_342 ,
|
Gorilla gorilla | ENSGGOG00000013770 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022360 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017065 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000015112 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005759 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013048 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007565 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008362 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000019425 | 1 retrocopy |