RetrogeneDB ID: | retro_ggor_712 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:54937804..54938549(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSGGOG00000005867 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.21 % |
Parental protein coverage: | 61.76 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL |
L...IQ.VILALGDYMGATC.ACIGGTNVRN.MQKL.AEAPH.V..TP.RVFDMLN.RY.SP.WIKMFVL | |
Retrocopy | LVLKIQNVILALGDYMGATCRACIGGTNVRN*MQKL*AEAPHTVASTPWRVFDMLNIRYFSPRWIKMFVL |
Parental | DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK-FMRDPIRILVKKEELTLEGIKQFY |
D.ADEMLS.GFKD.IYEIFQKLN.SIQVVLLSATMPTDVLEVTKK.FMRDPI.ILVKKE....EGIKQFY | |
Retrocopy | DDADEMLS*GFKDEIYEIFQKLNRSIQVVLLSATMPTDVLEVTKK>FMRDPI*ILVKKE----EGIKQFY |
Parental | INVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRS |
INVEREEWKL.TLCDLYETLTI.QAVIF.N.R..VDWLTEKMHARDF..S.LHGDMDQKERDVIMREF.S | |
Retrocopy | INVEREEWKLTTLCDLYETLTIMQAVIFPNARHEVDWLTEKMHARDFIISVLHGDMDQKERDVIMREF*S |
Parental | GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG |
.SS.VLITT.L.....DVQQVSLV.NYDL.TN.ENYIHRIGRG | |
Retrocopy | ESSGVLITTGLMVHETDVQQVSLVMNYDLTTNNENYIHRIGRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 643 .40 RPM |
SRP007412_cerebellum | 0 .16 RPM | 467 .74 RPM |
SRP007412_heart | 0 .00 RPM | 113 .04 RPM |
SRP007412_kidney | 0 .12 RPM | 341 .87 RPM |
SRP007412_liver | 0 .03 RPM | 228 .43 RPM |
SRP007412_testis | 0 .21 RPM | 292 .98 RPM |