RetrogeneDB ID: | retro_gmor_10 | ||
Retrocopylocation | Organism: | Cod (Gadus morhua) | |
Coordinates: | GeneScaffold_1013:174854..175235(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGMOG00000019704 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | rpl22l1 | ||
Ensembl ID: | ENSGMOG00000004077 | ||
Aliases: | None | ||
Description: | ribosomal protein L22-like 1 [Source:ZFIN;Acc:ZDB-GENE-060804-3] |
Percent Identity: | 72.32 % |
Parental protein coverage: | 95.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKGASWKFTLDLTHPVEDGILDSANFETFLKERIKVNGKTGNLGTAV-QVGRMKNKINVASDKQFSKRYL |
KK....KFTLD.THPVEDGI.D.ANFE.FL.ERIKVNGK.GNLG..V....R.K.KI.V.S...FSKRYL | |
Retrocopy | KKKQILKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERSKSKISVNSEVPFSKRYL |
Parental | KYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQEDDESE |
KYLTKKYLKKNNLRDWLRVVA..KE.YELRYFQI.Q...E.E | |
Retrocopy | KYLTKKYLKKNNLRDWLRVVANTKESYELRYFQINQDEEEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
EY973577 | 174890 | 175042 | 100 | 152 | 0 | 152 |