RetrogeneDB ID:

retro_nleu_1918

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397316.1:2519101..2519459(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22L1
Ensembl ID:ENSNLEG00000005287
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1918
GCATCTCCGAAAAACAAGAAGCCCAAGAGGTCAACCTGGAAGTTTAATTTGGACCTTACTCATCCAGCAGAAGATGGAAT
TTTTGATTCTGGAAATTTTGAACAATTTCTTCAGGAGAAGGTTAAAGTCAATGGCAAAACTGGATATGTTGGGAATGTTG
TTCACATTGAATGTTTCAAGGTAAAATCACAGTTCTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATACCTCACCA
AGAAATACCTGAAGAAAAGCAATCTTCATGATTGGCTTCGAATGGTTGCATCTGACAGGAGACTTACGAACTTTGTTACT
TCCAAATTAGCTAAGAAGATGAATCGGAGTCGGAGGAC

ORF - retro_nleu_1918 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.55 %
Parental protein coverage: 99.18 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAPQKDKKPKRSTWKFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFK-NKITVVSEK
A..K.KKPKRSTWKFNLDLTHP.EDGIFDSGNFEQFL.EKVKVNGKTG..GNVVHIE.FK..KITV.SEK
RetrocopyASPKNKKPKRSTWKFNLDLTHPAEDGIFDSGNFEQFLQEKVKVNGKTGYVGNVVHIECFK<GKITVLSEK
ParentalQFSKRYLKYLTKKYLKKNNLRDWLRVVASDK-ETYELRYFQISQDEDESESED
QFSKRYLKYLTKKYLKK.NL.DWLR.VASD..ETYEL.YFQIS..EDESESED
RetrocopyQFSKRYLKYLTKKYLKKSNLHDWLRMVASDR<ETYELCYFQIS-*EDESESED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1918 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 91 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000047301 retrocopy
Canis familiaris ENSCAFG000000149552 retrocopies
Callithrix jacchus ENSCJAG000000024271 retrocopy
Cavia porcellus ENSCPOG000000092151 retrocopy
Equus caballus ENSECAG000000188941 retrocopy
Erinaceus europaeus ENSEEUG000000119415 retrocopies
Echinops telfairi ENSETEG000000106589 retrocopies
Homo sapiens ENSG000001635841 retrocopy
Gorilla gorilla ENSGGOG000000017341 retrocopy
Gadus morhua ENSGMOG000000040771 retrocopy
Loxodonta africana ENSLAFG000000132202 retrocopies
Macropus eugenii ENSMEUG000000094841 retrocopy
Myotis lucifugus ENSMLUG000000230522 retrocopies
Myotis lucifugus ENSMLUG000000276838 retrocopies
Macaca mulatta ENSMMUG000000228812 retrocopies
Mus musculus ENSMUSG000000392214 retrocopies
Nomascus leucogenys ENSNLEG00000005287 2 retrocopies
retro_nleu_1918 , retro_nleu_2266,
Nomascus leucogenys ENSNLEG0000001033710 retrocopies
Oryctolagus cuniculus ENSOCUG000000149622 retrocopies
Otolemur garnettii ENSOGAG000000126422 retrocopies
Procavia capensis ENSPCAG000000087041 retrocopy
Pongo abelii ENSPPYG000000259001 retrocopy
Pteropus vampyrus ENSPVAG000000115241 retrocopy
Rattus norvegicus ENSRNOG000000118172 retrocopies
Sus scrofa ENSSSCG000000274415 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000229723 retrocopies
Tupaia belangeri ENSTBEG0000000035717 retrocopies
Tursiops truncatus ENSTTRG000000070353 retrocopies



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