RetrogeneDB ID: | retro_cjac_3983 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL286471.1:189..546(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000012485 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22L1 | ||
Ensembl ID: | ENSCJAG00000002427 | ||
Aliases: | None | ||
Description: | ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610] |
Percent Identity: | 69.67 % |
Parental protein coverage: | 98.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PQKDKKPKKSTWKFNLDLTHPVEDGIFDSGNFEQ-FLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQ |
PQKDKKPKKSTWKFNLDLTHPVEDGIFDSGNFEQ.F.....K...K................I......Q | |
Retrocopy | PQKDKKPKKSTWKFNLDLTHPVEDGIFDSGNFEQ>FYGRRLKLMAKL-EISGMLFTLNASRIISLLFLRQ |
Parental | FSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQ-ISQDEDESESED |
FSKRYLKYLTKKYLKKNNL.DWLRVVASDKET.EL.YFQ.IS.DE.ESESED | |
Retrocopy | FSKRYLKYLTKKYLKKNNLCDWLRVVASDKET*ELHYFQ<ISHDEEESESED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 6 .74 RPM |
SRP051959_heart | 0 .00 RPM | 4 .00 RPM |
SRP051959_kidney | 0 .00 RPM | 9 .16 RPM |
SRP051959_liver | 0 .00 RPM | 10 .96 RPM |
SRP051959_lung | 0 .00 RPM | 3 .90 RPM |
SRP051959_lymph_node | 0 .00 RPM | 8 .47 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 13 .10 RPM |
SRP051959_spleen | 0 .00 RPM | 7 .33 RPM |