RetrogeneDB ID:

retro_ttru_168

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1470:91937..92294(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22L1
Ensembl ID:ENSTTRG00000007035
Aliases:None
Description:ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610]


Retrocopy-Parental alignment summary:






>retro_ttru_168
GAGAAAGATAAGAGGCCTAAGAAGTCAGCCTGGAAGTTTAGTTTGGATCTTACTCATCCAGGAGAAGATGGAATTTTTGA
TTCTGGAAATTCTGAACAGTTTCTACGTTGAGAAAGTTAAAGTTTTTCCAGGAAAAACTGGAAATCTTGGGAATGTTGTT
CACATTAAAGCCTTCAAGAATAAAATCATGGTTGTTTCTGAGGAACGATTCTCTAAAAGGTATTTGAAATATCTTACCAA
GAAATACCTTAAAAAGAATAATCTTGGTGATCAGCTTCGGGGGTTGCATCTGATGAGGAGACTTACGAACTTCGTTACTT
CCAGATTAGTCAAGATGAAGGTGGATCTGAGTCTGAG

ORF - retro_ttru_168 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.82 %
Parental protein coverage: 99.16 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKKDKKPKKSTWKFNLDLTHPVEDGIFDSGNFEQFLR-EKVKV-NGKTGNLGNVVHIERFKSKITVASEKQ
.KDK.PKKS.WKF.LDLTHP.EDGIFDSGN.EQFLR.EKVKV..GKTGNLGNVVHI..FK.KI.V.SE..
RetrocopyEKDKRPKKSAWKFSLDLTHPGEDGIFDSGNSEQFLR>EKVKVFPGKTGNLGNVVHIKAFKNKIMVVSEER
ParentalFSKRYLKYLTKKYLKKNNLRDWLR-VVASDKETYELRYFQISQDEDGSESE
FSKRYLKYLTKKYLKKNNL.D.LR..VASD.ETYELRYFQISQDE.GSESE
RetrocopyFSKRYLKYLTKKYLKKNNLGDQLR<GVASDEETYELRYFQISQDEGGSESE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_168 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_168 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 89 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000047301 retrocopy
Canis familiaris ENSCAFG000000149552 retrocopies
Callithrix jacchus ENSCJAG000000024271 retrocopy
Cavia porcellus ENSCPOG000000092151 retrocopy
Equus caballus ENSECAG000000188941 retrocopy
Erinaceus europaeus ENSEEUG000000119415 retrocopies
Echinops telfairi ENSETEG000000106589 retrocopies
Homo sapiens ENSG000001635841 retrocopy
Gorilla gorilla ENSGGOG000000017341 retrocopy
Gadus morhua ENSGMOG000000040771 retrocopy
Loxodonta africana ENSLAFG000000132202 retrocopies
Macropus eugenii ENSMEUG000000094841 retrocopy
Myotis lucifugus ENSMLUG000000230522 retrocopies
Myotis lucifugus ENSMLUG000000276838 retrocopies
Macaca mulatta ENSMMUG000000228812 retrocopies
Mus musculus ENSMUSG000000392214 retrocopies
Nomascus leucogenys ENSNLEG000000052872 retrocopies
Oryctolagus cuniculus ENSOCUG000000149622 retrocopies
Otolemur garnettii ENSOGAG000000126422 retrocopies
Procavia capensis ENSPCAG000000087041 retrocopy
Pongo abelii ENSPPYG000000259001 retrocopy
Pteropus vampyrus ENSPVAG000000115241 retrocopy
Rattus norvegicus ENSRNOG000000118172 retrocopies
Sus scrofa ENSSSCG000000274415 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000229723 retrocopies
Tupaia belangeri ENSTBEG0000000035717 retrocopies
Tursiops truncatus ENSTTRG00000007035 3 retrocopies
retro_ttru_1180, retro_ttru_168 , retro_ttru_968,
Tursiops truncatus ENSTTRG000000104888 retrocopies



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