RetrogeneDB ID: | retro_hsap_1303 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:20617399..20617863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259074 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB7 | ||
Ensembl ID: | ENSG00000136930 | ||
Aliases: | PSMB7, Z | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 7 [Source:HGNC Symbol;Acc:9544] |
Percent Identity: | 68.94 % |
Parental protein coverage: | 56.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SNLELHSLSTGRLPR-VVTANRMLKQMLFRYQGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMG |
SNLELHS...G.LP..VV.AN.MLKQML..YQGYIGAALVL....V.TGPHLYSIYPH..TD.LP..... | |
Retrocopy | SNLELHSICSGHLPE<VVMANQMLKQMLLNYQGYIGAALVLRRLRVFTGPHLYSIYPHE*TDNLPH---H |
Parental | SGSLAAMAVFEDKF-RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT |
.G.LAA.AVFED...RPDM.EEEAK..VSEA.AAG.FN.LGSGS.IDL..I.K.K.DFL...TVP.KKGT | |
Retrocopy | HGCLAAKAVFEDIL<RPDMGEEEAKKMVSEATAAGFFNNLGSGSHIDLSIIGKRKVDFLGRFTVPKKKGT |
Parental | RLGRYRCEK-GTTAVLTEKIT |
R.GRYRCEK.GTTAVLT...T | |
Retrocopy | RFGRYRCEK>GTTAVLTKEAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 67 .86 RPM |
bodymap2_adrenal | 0 .00 RPM | 79 .03 RPM |
bodymap2_brain | 0 .00 RPM | 63 .76 RPM |
bodymap2_breast | 0 .00 RPM | 68 .72 RPM |
bodymap2_colon | 0 .00 RPM | 58 .66 RPM |
bodymap2_heart | 0 .00 RPM | 56 .16 RPM |
bodymap2_kidney | 0 .00 RPM | 72 .67 RPM |
bodymap2_liver | 0 .00 RPM | 84 .75 RPM |
bodymap2_lung | 0 .00 RPM | 53 .34 RPM |
bodymap2_lymph_node | 0 .00 RPM | 57 .98 RPM |
bodymap2_ovary | 0 .00 RPM | 66 .35 RPM |
bodymap2_prostate | 0 .00 RPM | 69 .26 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 61 .62 RPM |
bodymap2_testis | 0 .00 RPM | 108 .46 RPM |
bodymap2_thyroid | 0 .00 RPM | 72 .39 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 80 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1019 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003067 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005432 | 2 retrocopies | |
Homo sapiens | ENSG00000136930 | 1 retrocopy |
retro_hsap_1303 ,
|
Gorilla gorilla | ENSGGOG00000012164 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017268 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003513 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019596 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021354 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000204 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011732 | 3 retrocopies | |
Sorex araneus | ENSSARG00000009395 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009196 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |