Parental gene:

PSMB7, ENSPTRG00000021354

Aliases:None
Description:Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:H2QXV4]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:123416825..123480635(-)


>ENSPTRG00000021354
ATGGCGGCTGTGTCGGTGTATGCTCCACCAGTTGGAGGCTTCTCTTTTGATAACTGCCGCAGGAATGCCGTCTTGGAAGC
CGATTTTGCAAAGAGGGGATACAAGCTTCCAAAGGCCCGGAAAACTGGCACGACCATCGCTGGGGTGGTCTATAAGGATG
GCATAGTTCTTGGAGCAGATACAAGAGCAACTGAAGGGATGGTTGTTGCTGACAAGAACTGTTCAAAAATACACTTCATA
TCTCCTAATATTTATTGTTGTGGTGCTGGGACAGCTGCAGACACAGACATGACAACCCAGCTCATTTCTTCCAACCTGGA
GCTCCACTCCCTCTCCACTGGCCGTCTTCCCAGAGTTGTGACAGCCAATCGGATGCTGAAGCAGATGCTTTTCAGGTATC
AAGGTTACATTGGTGCAGCCCTAGTTTTAGGGGGAGTAGATGTTACTGGACCTCACCTCTACAGCATCTATCCTCATGGA
TCAACTGATAAGTTGCCTTATGTCACCATGGGTTCTGGCTCCTTGGCAGCAATGGCTGTATTTGAAGATAAGTTTAGGCC
AGACATGGAGGAGGAGGAAGCCAAGAATCTAGTGAGCGAAGCCATCGCAGCCGGCATCTTCAATGACCTGGGCTCCGGAA
GCAACATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCTCCGCCCATACACAGTGCCCAACAAGAAGGGGACC
AGGCTTGGCCGGTACAGGTGTGAGAAAGGGACTACTGCAGTCCTCACTGAGAAAATCACTCCTCTGGAGATTGAGGTGCT
GGAAGAAACAGTCCAAACAATGGACACTTCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 83 .94 RPM
SRP007412_cerebellum 80 .44 RPM
SRP007412_heart 105 .80 RPM
SRP007412_kidney 100 .29 RPM
SRP007412_liver 148 .78 RPM
SRP007412_testis 223 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003067 ortholog_one2one 2 retrogenes
retro_btau_1722, retro_btau_983,
Echinops telfairi ENSETEG00000005432 ortholog_one2one 2 retrogenes
retro_etel_2093, retro_etel_231,
Homo sapiens ENSG00000136930 ortholog_one2one 1 retrogene
retro_hsap_1303,
Gorilla gorilla ENSGGOG00000012164 ortholog_one2one 1 retrogene
retro_ggor_1019,
Nomascus leucogenys ENSNLEG00000017268 ortholog_one2one 1 retrogene
retro_nleu_2947,
Otolemur garnettii ENSOGAG00000003513 ortholog_one2one 1 retrogene
retro_ogar_2828,
Pongo abelii ENSPPYG00000019596 ortholog_one2one 1 retrogene
retro_pabe_1092,
Pteropus vampyrus ENSPVAG00000000204 ortholog_one2one 2 retrogenes
retro_pvam_1271, retro_pvam_866,
Rattus norvegicus ENSRNOG00000011732 ortholog_one2many 3 retrogenes
retro_rnor_1581, retro_rnor_1582, retro_rnor_2469,
Sorex araneus ENSSARG00000009395 ortholog_one2one 1 retrogene
retro_sara_532,
Tupaia belangeri ENSTBEG00000009196 ortholog_one2one 2 retrogenes
retro_tbel_2889, retro_tbel_751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_893 70.19 56.68
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Download FASTA sequences of all ENSPTRG00000021354 retrocopies