RetrogeneDB ID: | retro_rnor_2469 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:94159128..94159808(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026659 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psmb7 | ||
Ensembl ID: | ENSRNOG00000011732 | ||
Aliases: | None | ||
Description: | Proteasome subunit beta type-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9JHW0] |
Percent Identity: | 74.79 % |
Parental protein coverage: | 83.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAAVSVFQAPVGGFS-FDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKD-GIVLGADTRATEGMV |
M.AVSVFQ..VGGFS.FDNC.RNA.LEA.FAKKGFKL.K..KTGTT..GVVYK..GIVLG.D...TEGMV | |
Retrocopy | MVAVSVFQTVVGGFS<FDNCNRNAILEANFAKKGFKLLKSWKTGTTMVGVVYKE<GIVLGEDI--TEGMV |
Parental | VADKNCSKIHFISPNIYCCGAGTAADTDMT-TQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYI |
VA.KNCSKI.FISPNI..CGAGTAADT.....QL.SSNLELHSLTTG.L.RVV.ANR.LKQMLFR.QGYI | |
Retrocopy | VAEKNCSKIQFISPNICSCGAGTAADTERK<AQLTSSNLELHSLTTGHLLRVVPANRTLKQMLFRCQGYI |
Parental | GAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAI-AAGI |
G..LVLG.VD.T..H..SIYPHG.TDKLPYVTM.SG.L.AMAVFE.KFRPDMEEE.AKKL..EA....GI | |
Retrocopy | GEDLVLGIVDATRLHRCSIYPHGLTDKLPYVTMCSGFLTAMAVFEEKFRPDMEEEKAKKLAREAL<VDGI |
Parental | FNDLGSGSNIDLCVISKSKLDFLR |
F.DLGSGS.IDLCVIS.SK..FL. | |
Retrocopy | FTDLGSGSSIDLCVISNSKMGFLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 66 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .99 RPM |
SRP017611_liver | 0 .00 RPM | 50 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003067 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005432 | 2 retrocopies | |
Homo sapiens | ENSG00000136930 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012164 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017268 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003513 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019596 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021354 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000204 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011732 | 3 retrocopies |
retro_rnor_1581, retro_rnor_1582, retro_rnor_2469 ,
|
Sorex araneus | ENSSARG00000009395 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009196 | 2 retrocopies |