RetrogeneDB ID: | retro_ptro_893 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:19101111..19101575(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB7 | ||
Ensembl ID: | ENSPTRG00000021354 | ||
Aliases: | None | ||
Description: | Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:H2QXV4] |
Percent Identity: | 70.19 % |
Parental protein coverage: | 56.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SNLELHSLSTGRLPR-VVTANRMLKQMLFRYQGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMG |
SNLELHS...G.LP..VV.AN.MLKQML...Q.YIGAALVL....V.TGPHLYSIYPH.STD.LP..... | |
Retrocopy | SNLELHSICSGHLPE<VVMANQMLKQMLLKNQVYIGAALVLRRLRVFTGPHLYSIYPHESTDNLPH---H |
Parental | SGSLAAMAVFEDKF-RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT |
.GSLAA.AVFED...RPDM.EEEAK..VSEA.AAG.FN.LGSGS.IDL..I.K.K.DFL.P.TVP.KKGT | |
Retrocopy | HGSLAAKAVFEDIL<RPDMGEEEAKKMVSEATAAGFFNNLGSGSHIDLSIIGKSKVDFLGPFTVPKKKGT |
Parental | RLGRYRCEK-GTTAVLTEKIT |
R.GRYRCEK.GTTAVLTE..T | |
Retrocopy | RFGRYRCEK>GTTAVLTEEAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 83 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 80 .44 RPM |
SRP007412_heart | 0 .00 RPM | 105 .80 RPM |
SRP007412_kidney | 0 .00 RPM | 100 .29 RPM |
SRP007412_liver | 0 .00 RPM | 148 .78 RPM |
SRP007412_testis | 0 .00 RPM | 223 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003067 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005432 | 2 retrocopies | |
Homo sapiens | ENSG00000136930 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012164 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017268 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003513 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019596 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021354 | 1 retrocopy |
retro_ptro_893 ,
|
Pteropus vampyrus | ENSPVAG00000000204 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011732 | 3 retrocopies | |
Sorex araneus | ENSSARG00000009395 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009196 | 2 retrocopies |