RetrogeneDB ID: | retro_hsap_1879 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:33853663..33854562(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000267404 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR45B | ||
Ensembl ID: | ENSG00000141580 | ||
Aliases: | WDR45B, WDR45L, WIPI-3, WIPI3 | ||
Description: | WD repeat domain 45B [Source:HGNC Symbol;Acc:25072] |
Percent Identity: | 76.97 % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDD-LKKKTVIEIEFSTEVKAVKLRRDRI |
K....FL.G.VGH.EMLF.CNYLALV.GGKKPKY.PNKVMI.DD.LKKKTV.EIEF.TEVKAVKL.RDRI | |
Retrocopy | KKRNKFLGGRVGHNEMLFCCNYLALVVGGKKPKYLPNKVMI*DD<LKKKTVNEIEFATEVKAVKLQRDRI |
Parental | VVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCP-NSNNSLLAFPGTHTGHVQLVDLASTEKPPVDI |
VVVLDSMIKVF..T.NPHQL..FET..NPKGLC.L.....N..L.A.PG.HT.HVQLVD.ASTEKPPVDI | |
Retrocopy | VVVLDSMIKVFALTQNPHQLYIFETS*NPKGLCPLSQ>SNNSLL-ALPGMHTSHVQLVDWASTEKPPVDI |
Parental | PAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH |
PA.EG.LSC..LNLQGTRIAT...KGTLIRIFDTSSGHLIQEL.RGSQAAN..CINFNQD.S.IC.SSDH | |
Retrocopy | PAPEGILSCMILNLQGTRIATTLAKGTLIRIFDTSSGHLIQEL*RGSQAANVFCINFNQDESFICISSDH |
Parental | GTVHIFAAEDPKRNKQSSLASASFLPKYFSSKW-SFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKF |
.TVHIFAAEDP.R.KQS.L.SASFLPK.FS.K...FSKFQVP.GSPCICA.GTEPN.V.AICAD..YYKF | |
Retrocopy | STVHIFAAEDPGRKKQSNLVSASFLPKSFSCKG<GFSKFQVPLGSPCICALGTEPNVVTAICADVGYYKF |
Parental | LFNPKGECIRDVYAQFLEMTDDKL |
LFNP..ECI.D.YAQFLEM..DKL | |
Retrocopy | LFNPRRECIPDIYAQFLEMIYDKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 64 .72 RPM |
bodymap2_adrenal | 0 .00 RPM | 82 .98 RPM |
bodymap2_brain | 0 .00 RPM | 93 .81 RPM |
bodymap2_breast | 0 .00 RPM | 61 .48 RPM |
bodymap2_colon | 0 .00 RPM | 47 .86 RPM |
bodymap2_heart | 0 .00 RPM | 37 .83 RPM |
bodymap2_kidney | 0 .00 RPM | 64 .79 RPM |
bodymap2_liver | 0 .00 RPM | 38 .42 RPM |
bodymap2_lung | 0 .00 RPM | 71 .10 RPM |
bodymap2_lymph_node | 0 .00 RPM | 58 .60 RPM |
bodymap2_ovary | 0 .62 RPM | 85 .20 RPM |
bodymap2_prostate | 0 .00 RPM | 74 .82 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 20 .22 RPM |
bodymap2_testis | 0 .00 RPM | 135 .12 RPM |
bodymap2_thyroid | 0 .00 RPM | 71 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 44 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1376 |
Pongo abelii | retro_pabe_1559 |
Macaca mulatta | retro_mmul_1330 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005657 | 1 retrocopy | |
Homo sapiens | ENSG00000141580 | 2 retrocopies |
retro_hsap_1820, retro_hsap_1879 ,
|
Gorilla gorilla | ENSGGOG00000006132 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000013344 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021803 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025173 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010516 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008785 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009807 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006212 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |