RetrogeneDB ID: | retro_pabe_150 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:26906442..26907471(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000008155 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR45L | ||
Ensembl ID: | ENSPPYG00000008785 | ||
Aliases: | WDR45B, WDR45L, WIPI3 | ||
Description: | WD repeat domain phosphoinositide-interacting protein 3 [Source:RefSeq peptide;Acc:NP_001127514] |
Percent Identity: | 93.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVG |
.NLLPCNP.GN.L.YAGFNQDH.CFACGMENGF.VYNTDPLK.KEKQ.FLEGG.GHVEMLFRCNYLALVG | |
Retrocopy | VNLLPCNPQGNWLHYAGFNQDHRCFACGMENGFGVYNTDPLKKKEKQ-FLEGGIGHVEMLFRCNYLALVG |
Parental | GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYN |
GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDS.IKVFTFTHNPH.LHVF.TCYN | |
Retrocopy | GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSVIKVFTFTHNPHRLHVFKTCYN |
Parental | PKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLI |
.KGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSC.ALNLQGTRIATASEKGTL. | |
Retrocopy | LKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCSALNLQGTRIATASEKGTLM |
Parental | RIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYF |
RIFDTSSGHLIQ.LRRGSQAANIYCINFNQDASLICVS.DHGTVHIFAAEDPKRNKQSSLASASFLPKYF | |
Retrocopy | RIFDTSSGHLIQQLRRGSQAANIYCINFNQDASLICVSGDHGTVHIFAAEDPKRNKQSSLASASFLPKYF |
Parental | SSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPKGECIRDVYAQFLEMTDDKL |
S.KWSFS.FQVPSGSPCICAFGTEPNAV.AICAD.SYYKFLF.PK.ECIRDVY.QFLEMTDDKL | |
Retrocopy | SYKWSFSTFQVPSGSPCICAFGTEPNAVTAICADCSYYKFLFDPKEECIRDVYTQFLEMTDDKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .28 RPM | 45 .78 RPM |
SRP007412_cerebellum | 0 .24 RPM | 40 .49 RPM |
SRP007412_heart | 0 .30 RPM | 12 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .20 RPM |
SRP007412_liver | 0 .00 RPM | 14 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1820 |
Pan troglodytes | retro_ptro_1171 |
Gorilla gorilla | retro_ggor_2173 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005657 | 1 retrocopy | |
Homo sapiens | ENSG00000141580 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006132 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000013344 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021803 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025173 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010516 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008785 | 2 retrocopies |
retro_pabe_150 , retro_pabe_1559,
|
Pongo abelii | ENSPPYG00000020333 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009807 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006212 | 1 retrocopy |