RetrogeneDB ID: | retro_hsap_1925 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:22265858..22266315(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000266520 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC1 | ||
Ensembl ID: | ENSG00000136238 | ||
Aliases: | RAC1, Rac-1, TC-25, p21-Rac1 | ||
Description: | ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:9801] |
Percent Identity: | 68.15 % |
Parental protein coverage: | 79.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MQAIKCVVVGDGAVGKTCLLISYT-TNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAG-QEDYDRL |
MQA..C.V..D..V.KT.LL.SYT.T.A..GE.IP.VFDNYSA.V.VDGK.PVNLG..DT.G....YD.L | |
Retrocopy | MQAVMCSVAEDRFVDKTYLLFSYT<TSALLGEEIPIVFDNYSASVTVDGK>PVNLGSRDTTG<MTEYDGL |
Parental | RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP |
..LSY.QTD.F.ICFS.VSPASFEN..AKWYP...HH.C.N.PIILVGTK.DLRDDK..I.KLKEK.LTP | |
Retrocopy | HFLSYLQTDEFFICFSFVSPASFENTCAKWYPDIHHH<CSNMPIILVGTKRDLRDDKAMIRKLKEKQLTP |
Parental | ITYPQGLAMAKEIGAVK |
ITYPQG.A.AKEI.A.K | |
Retrocopy | ITYPQG*ATAKEISALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 299 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 316 .19 RPM |
bodymap2_brain | 0 .00 RPM | 421 .92 RPM |
bodymap2_breast | 0 .00 RPM | 323 .35 RPM |
bodymap2_colon | 0 .00 RPM | 312 .24 RPM |
bodymap2_heart | 0 .00 RPM | 153 .30 RPM |
bodymap2_kidney | 0 .00 RPM | 226 .02 RPM |
bodymap2_liver | 0 .00 RPM | 109 .86 RPM |
bodymap2_lung | 0 .00 RPM | 367 .58 RPM |
bodymap2_lymph_node | 0 .00 RPM | 226 .96 RPM |
bodymap2_ovary | 0 .00 RPM | 345 .11 RPM |
bodymap2_prostate | 0 .00 RPM | 336 .25 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 296 .79 RPM |
bodymap2_testis | 0 .00 RPM | 223 .28 RPM |
bodymap2_thyroid | 0 .00 RPM | 299 .27 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 226 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1288 |
Gorilla gorilla | retro_ggor_1403 |
Pongo abelii | retro_pabe_1591 |
Macaca mulatta | retro_mmul_1346 |
Callithrix jacchus | retro_cjac_1158 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000070831 | 6 retrocopies | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Homo sapiens | ENSG00000136238 | 6 retrocopies |
retro_hsap_1256, retro_hsap_1925 , retro_hsap_28, retro_hsap_3036, retro_hsap_3072, retro_hsap_4910,
|
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001847 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006784 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |