RetrogeneDB ID: | retro_tsyr_2068 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_86296:3952..4337(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC1 | ||
Ensembl ID: | ENSTSYG00000001618 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:9801] |
Percent Identity: | 68.42 % |
Parental protein coverage: | 65.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DRLRPLSYPQTVG-ETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG |
..L..LS...TVG.E.Y.....S.....P..DVFLICFSL.SPA.FENVR.K.YPEV.H..PN..IILV. | |
Retrocopy | EKLVTLSLWDTVGQEDYDRFRPSLSHPQP--DVFLICFSLLSPALFENVRTK*YPEVWHRDPNSLIILVR |
Parental | TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFD-EAIRA |
TKLDLRDD.D.I.KLKEK.LTPITY.Q.LAMAKEI.AVKYLECSALTQ..GLKTVF..EAIRA | |
Retrocopy | TKLDLRDDEDPIKKLKEKMLTPITYLQNLAMAKEISAVKYLECSALTQE<GLKTVFE<EAIRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000136238 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001847 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006784 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies |
retro_tsyr_2027, retro_tsyr_2068 ,
|
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |