RetrogeneDB ID: | retro_hsap_2321 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:132480823..132481753(-) | ||
Located in intron of: | ENSG00000197927 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213222 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM40 | ||
Ensembl ID: | ENSG00000130204 | ||
Aliases: | TOMM40, C19orf1, D19S1177E, PER-EC1, PEREC1, TOM40 | ||
Description: | translocase of outer mitochondrial membrane 40 homolog (yeast) [Source:HGNC Symbol;Acc:18001] |
Percent Identity: | 93.35 % |
Parental protein coverage: | 86.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GFTLPPLGGSLGAGTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKL |
GFTLPPLGG.LGAGTSTSR.SE.TPGAATASASGAAEDGACGCLPNPGTF.ECHRKCKELFPIQMEGVKL | |
Retrocopy | GFTLPPLGGGLGAGTSTSRGSELTPGAATASASGAAEDGACGCLPNPGTFGECHRKCKELFPIQMEGVKL |
Parental | TVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLR |
.VNKGLSNHFQVNHTVALSTI.ES.YHFGVTYVGTKQLSPTEAF.VLVGDMDNSGSLNAQVIHQLGP.LR | |
Retrocopy | IVNKGLSNHFQVNHTVALSTIRESSYHFGVTYVGTKQLSPTEAFLVLVGDMDNSGSLNAQVIHQLGPRLR |
Parental | SKMAIQTQQSKFVNWQVDGEYRGSD-FTAAVTLG-NPDVLVGSGILVAHYLQSITPCLALGGELVYHRRP |
SKMAIQTQQSKFVNWQVDGEYRGSD..TAAVTLG.NPDVLVGSGILVAHYLQSITPCLALG..LVYH..P | |
Retrocopy | SKMAIQTQQSKFVNWQVDGEYRGSD<LTAAVTLG>NPDVLVGSGILVAHYLQSITPCLALGRMLVYHQQP |
Parental | GEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKAN |
GEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKA. | |
Retrocopy | GEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKA- |
Parental | LLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNH |
...KGSVDSNWIV.ATLEKKLPPLPLTLALGAFLNH | |
Retrocopy | ---KGSVDSNWIVCATLEKKLPPLPLTLALGAFLNH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .38 RPM | 23 .56 RPM |
bodymap2_adrenal | 1 .02 RPM | 42 .52 RPM |
bodymap2_brain | 0 .45 RPM | 22 .57 RPM |
bodymap2_breast | 0 .41 RPM | 15 .64 RPM |
bodymap2_colon | 0 .19 RPM | 19 .86 RPM |
bodymap2_heart | 0 .09 RPM | 12 .96 RPM |
bodymap2_kidney | 0 .91 RPM | 27 .28 RPM |
bodymap2_liver | 0 .00 RPM | 28 .86 RPM |
bodymap2_lung | 0 .35 RPM | 14 .01 RPM |
bodymap2_lymph_node | 0 .05 RPM | 17 .31 RPM |
bodymap2_ovary | 0 .96 RPM | 33 .00 RPM |
bodymap2_prostate | 0 .33 RPM | 18 .20 RPM |
bodymap2_skeletal_muscle | 0 .11 RPM | 34 .01 RPM |
bodymap2_testis | 1 .09 RPM | 32 .16 RPM |
bodymap2_thyroid | 0 .30 RPM | 28 .27 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_39 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000130204 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000014041 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000028928 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001726 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023582 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011126 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009019 | 1 retrocopy | |
Drosophila melanogaster | FBgn0016041 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .73 RPM |
CEU_NA11843 | 0 .80 RPM |
CEU_NA11930 | 0 .55 RPM |
CEU_NA12004 | 0 .84 RPM |
CEU_NA12400 | 0 .60 RPM |
CEU_NA12751 | 0 .95 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .66 RPM |
CEU_NA12872 | 0 .24 RPM |
CEU_NA12873 | 1 .53 RPM |
FIN_HG00183 | 0 .77 RPM |
FIN_HG00277 | 1 .04 RPM |
FIN_HG00315 | 0 .47 RPM |
FIN_HG00321 | 0 .91 RPM |
FIN_HG00328 | 0 .59 RPM |
FIN_HG00338 | 0 .81 RPM |
FIN_HG00349 | 0 .46 RPM |
FIN_HG00375 | 0 .90 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .28 RPM |
GBR_HG00099 | 0 .78 RPM |
GBR_HG00111 | 0 .24 RPM |
GBR_HG00114 | 0 .47 RPM |
GBR_HG00119 | 0 .43 RPM |
GBR_HG00131 | 0 .66 RPM |
GBR_HG00133 | 0 .92 RPM |
GBR_HG00134 | 1 .38 RPM |
GBR_HG00137 | 0 .60 RPM |
GBR_HG00142 | 0 .58 RPM |
GBR_HG00143 | 0 .99 RPM |
TSI_NA20512 | 0 .42 RPM |
TSI_NA20513 | 1 .02 RPM |
TSI_NA20518 | 0 .94 RPM |
TSI_NA20532 | 0 .95 RPM |
TSI_NA20538 | 0 .97 RPM |
TSI_NA20756 | 0 .29 RPM |
TSI_NA20765 | 0 .12 RPM |
TSI_NA20771 | 0 .65 RPM |
TSI_NA20786 | 0 .44 RPM |
TSI_NA20798 | 0 .50 RPM |
YRI_NA18870 | 0 .71 RPM |
YRI_NA18907 | 0 .62 RPM |
YRI_NA18916 | 1 .03 RPM |
YRI_NA19093 | 0 .47 RPM |
YRI_NA19099 | 0 .59 RPM |
YRI_NA19114 | 1 .34 RPM |
YRI_NA19118 | 1 .08 RPM |
YRI_NA19213 | 1 .34 RPM |
YRI_NA19214 | 1 .11 RPM |
YRI_NA19223 | 1 .05 RPM |