RetrogeneDB ID: | retro_mmur_420 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_2940:178671..179272(+) | ||
Located in intron of: | ENSMICG00000005441 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM40 | ||
Ensembl ID: | ENSMICG00000014041 | ||
Aliases: | None | ||
Description: | translocase of outer mitochondrial membrane 40 homolog (yeast) [Source:HGNC Symbol;Acc:18001] |
Percent Identity: | 52.24 % |
Parental protein coverage: | 55.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGI |
FP..VGD.D.SGSLNA.....L...LR.K...Q.QQ.KF..WQ...E..G.D.T...TLGNPD......I | |
Retrocopy | FPTVVGDSDSSGSLNALFLLLLAEQLRAKAVFQMQQAKFPTWQFH*ECQGDDYTDILTLGNPDLIGELVI |
Parental | LVAHYLQSITPCLALGGELVYRRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV |
.V...LQS.T..L.LGGE.VY...PG.EG.....AGKY....W.A....G....HA..YH.A..Q...GV | |
Retrocopy | MVPYFLQSFTLWLVLGGEPVYHWWPGKEGVNLTVAGKYLAVYWVAALNMGPGRGHASDYHRAKEQV*AGV |
Parental | EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKL-PPLPLTLALGAFLN |
EFE...R...T..SFGY.L.L..AN..F.G.VDSNW.VGA.LEKK..PPLP.TLALGAFLN | |
Retrocopy | EFEVNARLHVTTFSFGYHLTLLQANMVFRGLVDSNWCVGAMLEKKM>PPLPVTLALGAFLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000130204 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023033 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014041 | 1 retrocopy |
retro_mmur_420 ,
|
Myotis lucifugus | ENSMLUG00000028928 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014303 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001726 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023582 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025858 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011126 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009019 | 1 retrocopy | |
Drosophila melanogaster | FBgn0016041 | 1 retrocopy |