RetrogeneDB ID: | retro_itri_150 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393578.1:150962..152048(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020114 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000009019 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGGLGAGASAGRGSDRTAGAATVSAAGVAD |
MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGGLGAGASAGRGSDRTAGAATVSAAGVAD | |
Retrocopy | MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGGLGAGASAGRGSDRTAGAATVSAAGVAD |
Parental | NGACDCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQ |
NGACDCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQ | |
Retrocopy | NGACDCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQ |
Parental | LSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDV |
LSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDV | |
Retrocopy | LSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDV |
Parental | LVGSGILVAHYLQSITPCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASD |
LVGSGILVAHYLQSITPCL.LGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASD | |
Retrocopy | LVGSGILVAHYLQSITPCLTLGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASD |
Parental | QLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKN |
QLQVGVEFEASTRMQDTSVSFGYQLDL.KANLLFK.SVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKN | |
Retrocopy | QLQVGVEFEASTRMQDTSVSFGYQLDLLKANLLFKASVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKN |
Parental | KFQCGFGLTIG |
KFQCGFGLT.G | |
Retrocopy | KFQCGFGLTVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000130204 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023033 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014041 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000028928 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014303 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001726 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023582 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025858 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011126 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003800 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009019 | 1 retrocopy |
retro_itri_150 ,
|
Drosophila melanogaster | FBgn0016041 | 1 retrocopy |