RetrogeneDB ID: | retro_hsap_2344 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:174342726..174342960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236832 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBY1 | ||
Ensembl ID: | ENSG00000100211 | ||
Aliases: | CBY1, C22orf2, CBY, HS508I15A, PGEA1, PIGEA-14, PIGEA14, arb1 | ||
Description: | chibby homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:1307] |
Percent Identity: | 73.08 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL |
QS.KFENG.WIAETG.SGGVDRRE.Q.L.R.N.QLEEEN.LL.LKVDILLDM.SE.TA.S.LMEKELD.. | |
Retrocopy | QSQKFENGRWIAETGISGGVDRREAQCLHRQN*QLEEENSLLQLKVDILLDMFSETTAKSLLMEKELDAW |
Parental | R-ISRKRK |
...S..RK | |
Retrocopy | KSVSQRRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .71 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .10 RPM |
bodymap2_brain | 0 .00 RPM | 8 .06 RPM |
bodymap2_breast | 0 .00 RPM | 13 .15 RPM |
bodymap2_colon | 0 .00 RPM | 25 .68 RPM |
bodymap2_heart | 0 .00 RPM | 11 .82 RPM |
bodymap2_kidney | 0 .00 RPM | 21 .38 RPM |
bodymap2_liver | 0 .00 RPM | 5 .58 RPM |
bodymap2_lung | 0 .00 RPM | 11 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 9 .52 RPM |
bodymap2_ovary | 0 .00 RPM | 18 .97 RPM |
bodymap2_prostate | 0 .00 RPM | 26 .01 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 7 .46 RPM |
bodymap2_testis | 0 .00 RPM | 23 .43 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .16 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2 .09 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1716 |
Gorilla gorilla | retro_ggor_1781 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001384 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010982 | 1 retrocopy | |
Homo sapiens | ENSG00000100211 | 1 retrocopy |
retro_hsap_2344 ,
|
Gorilla gorilla | ENSGGOG00000013226 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003757 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013150 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015153 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028533 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014373 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001484 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |