RetrogeneDB ID: retro_nleu_349

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397263.1:17275366..17275600(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBY1
• Ensembl ID: ENSNLEG00000015153
• Aliases: None
• Description: None

Sequence

>retro_nleu_349
CGAAGTCAGAAGTTTGAAAATGGCCGGTGGATACCAGAGACAGGGAGTAGTGGAGGTGTGGACCGGAGGGAGGCCCAGTG
CCTTCACAGGCAGAACTAGCAACTGGAGGAAGAGAACAGTCTCTTGCAGCTGAAAGTGGACATCCTGCTGGACATGTTTT
CAGAGACCACTGCTAAATCCCTTTTAATGGAGAAGGAACTGGATGCACGGAAGAGTGTCAGCCAGGGGAGAAAA

Alignment

ORF - retro_nleu_349 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.38 %
• Parental protein coverage: 60.8 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QSLKFENGQWIAETGVSGGVDRREVQRLQAEP-AVEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL
          .S.KFENG.WI.ETG.SGGVDRRE.Q.L.......EEEN.LL.LKVDILLDM.SE.TA.S.LMEKELD..
Retrocopy RSQKFENGRWIPETGSSGGVDRREAQCLHRQN*QLEEENSLLQLKVDILLDMFSETTAKSLLMEKELDAR

Parental  R-ISRKRK
          ...S..RK
Retrocopy KSVSQGRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_349 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001384	2 retrocopies	retro_cfam_1396, retro_cfam_852,
Dasypus novemcinctus	ENSDNOG00000010982	1 retrocopy	retro_dnov_875,
Homo sapiens	ENSG00000100211	1 retrocopy	retro_hsap_2344,
Gorilla gorilla	ENSGGOG00000013226	1 retrocopy	retro_ggor_1781,
Myotis lucifugus	ENSMLUG00000003757	2 retrocopies	retro_mluc_1128, retro_mluc_2608,
Mustela putorius furo	ENSMPUG00000013150	1 retrocopy	retro_mputfur_1186,
Nomascus leucogenys	ENSNLEG00000015153	1 retrocopy	retro_nleu_349 ,
Otolemur garnettii	ENSOGAG00000028533	1 retrocopy	retro_ogar_1072,
Pan troglodytes	ENSPTRG00000014373	1 retrocopy	retro_ptro_1716,
Vicugna pacos	ENSVPAG00000001484	1 retrocopy	retro_vpac_57,