RetrogeneDB ID: retro_mluc_1128

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429797:6601052..6601316(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBY1
• Ensembl ID: ENSMLUG00000003757
• Aliases: None
• Description: None

Sequence

>retro_mluc_1128
ATGCCTCTCTTTGGGAATACGTCCAGTCCAAAGAAGACTCCCCCTTGGAAATCTGCCTCTCTCTCCAACCTGCATAGACA
AACAAGTGAGGTAGAGATGGGCCTCGACTATAGAAGCCCCATTGTGAACCTGACGGGAGAAAGCCTGAAGTGTGGAAATG
GCCACTGGGTAGCAGAGACTGGGATTAGTGGAAGTGTGGACCAGAGGGAGATTCAATGCCTCCGGAAGAGGAACAATCTC
TTGCAGGTGGACGTAGATGTCCTG

Alignment

ORF - retro_mluc_1128 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.33 %
• Parental protein coverage: 71.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPLFGNTFSPKKTPPRKSASLSNLHNLDRSTREVELGLDYGTPTMNLAGQSLKFENGHWVAETGISGGVD
          MPLFGNT.SPKKTPP.KSASLSNLH...R.T.EVE.GLDY..P..NL.G.SLK..NGHWVAETGISG.VD
Retrocopy MPLFGNTSSPKKTPPWKSASLSNLH---RQTSEVEMGLDYRSPIVNLTGESLKCGNGHWVAETGISGSVD

Parental  QREAQRLRKRNQQLEEENNLL
          QRE.Q.LRKRN..L......L
Retrocopy QREIQCLRKRNNLLQVDVDVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1128 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001384	2 retrocopies	retro_cfam_1396, retro_cfam_852,
Dasypus novemcinctus	ENSDNOG00000010982	1 retrocopy	retro_dnov_875,
Homo sapiens	ENSG00000100211	1 retrocopy	retro_hsap_2344,
Gorilla gorilla	ENSGGOG00000013226	1 retrocopy	retro_ggor_1781,
Myotis lucifugus	ENSMLUG00000003757	2 retrocopies	retro_mluc_1128 , retro_mluc_2608,
Mustela putorius furo	ENSMPUG00000013150	1 retrocopy	retro_mputfur_1186,
Nomascus leucogenys	ENSNLEG00000015153	1 retrocopy	retro_nleu_349,
Otolemur garnettii	ENSOGAG00000028533	1 retrocopy	retro_ogar_1072,
Pan troglodytes	ENSPTRG00000014373	1 retrocopy	retro_ptro_1716,
Vicugna pacos	ENSVPAG00000001484	1 retrocopy	retro_vpac_57,