RetrogeneDB ID: | retro_hsap_3132 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:187250031..187250755(-) | ||
Located in intron of: | ENSG00000251165 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213332 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A5 | ||
Ensembl ID: | ENSG00000005022 | ||
Aliases: | SLC25A5, 2F1, AAC2, ANT2, T2, T3 | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:HGNC Symbol;Acc:10991] |
Percent Identity: | 82.66 % |
Parental protein coverage: | 81.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MTDAAVSF-AKDFLAGGVAAAISKTAVAPIER-VKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQ-GV |
MTDAAVS..AKDFLAGGV.AAISK.AVAP.E..VKLLLQVQ.ASKQITADKQY.G..DC.VRIPKEQ.GV | |
Retrocopy | MTDAAVSL<AKDFLAGGVTAAISKMAVAPTEG<VKLLLQVQSASKQITADKQYTGVVDCMVRIPKEQ<GV |
Parental | LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV-DKRTQFWLYFAGNLASGGAAGATSLCFVYPLDF |
LS.W.GNLANVIRYFPT.ALNFAFKDK.KQIF.GGV.DKR.QFW..FAG.LASGGA.GATSLCFVYPLDF | |
Retrocopy | LSLWHGNLANVIRYFPTHALNFAFKDKNKQIFPGGV<DKRIQFWHKFAGSLASGGAPGATSLCFVYPLDF |
Parental | ARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPK |
.RT.LAADVGKAGAEREF.GLGD.LVKIYKSDGIKGLYQG.N.SVQGIIIYRAA.FG.YDTA..MLPD.. | |
Retrocopy | DRTHLAADVGKAGAEREFQGLGDRLVKIYKSDGIKGLYQGSNRSVQGIIIYRAACFGVYDTARRMLPDSR |
Parental | NTHI-VISWMIAQTVTAVAGLTSYPFDTVRRRMMMQSG |
NTH..VIS.MIAQ.VTAVAGLTSYPFD.VR..MMMQSG | |
Retrocopy | NTHM<VISRMIAQSVTAVAGLTSYPFDAVRHGMMMQSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 150 .50 RPM |
bodymap2_adrenal | 0 .00 RPM | 158 .47 RPM |
bodymap2_brain | 0 .00 RPM | 170 .34 RPM |
bodymap2_breast | 0 .00 RPM | 130 .43 RPM |
bodymap2_colon | 0 .00 RPM | 216 .39 RPM |
bodymap2_heart | 0 .00 RPM | 60 .88 RPM |
bodymap2_kidney | 0 .00 RPM | 364 .18 RPM |
bodymap2_liver | 0 .00 RPM | 184 .77 RPM |
bodymap2_lung | 0 .00 RPM | 195 .71 RPM |
bodymap2_lymph_node | 0 .00 RPM | 157 .52 RPM |
bodymap2_ovary | 0 .00 RPM | 116 .39 RPM |
bodymap2_prostate | 0 .00 RPM | 124 .64 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 35 .70 RPM |
bodymap2_testis | 0 .15 RPM | 101 .84 RPM |
bodymap2_thyroid | 0 .00 RPM | 132 .35 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 186 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2146 |
Pongo abelii | retro_pabe_2587 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |