RetrogeneDB ID: | retro_hsap_260 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:168338291..168338836(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227722 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCTN5 | ||
Ensembl ID: | ENSG00000166847 | ||
Aliases: | None | ||
Description: | dynactin 5 (p25) [Source:HGNC Symbol;Acc:24594] |
Percent Identity: | 87.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTI-VMNDCIIRGDLANVRVGRHCVVKSRSVI |
MELGELLYNKSEYI.TASGNKVS.QSVLCGSQNI.LN.KT..V.NDCII.GDL.N.R.G.HCVVKS.SVI | |
Retrocopy | MELGELLYNKSEYIKTASGNKVSLQSVLCGSQNILLNRKTM<VVNDCII*GDLENIRDGLHCVVKSCSVI |
Parental | RPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETV |
RPPFKKFSKGV.FFPLHIGDHVFIEE.CVVNAAQIGS..HVGKNCVIG.RC.LKDCCKILDNT.LPPETV | |
Retrocopy | RPPFKKFSKGVEFFPLHIGDHVFIEEECVVNAAQIGSCIHVGKNCVIGCRCLLKDCCKILDNTALPPETV |
Parental | VPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV |
VPPFTVFSGCPG.FSGEL.ECTQEL.IDVTKSYYQKFLPLTQV | |
Retrocopy | VPPFTVFSGCPGCFSGELVECTQELTIDVTKSYYQKFLPLTQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 40 .69 RPM |
bodymap2_adrenal | 0 .00 RPM | 46 .20 RPM |
bodymap2_brain | 0 .00 RPM | 32 .42 RPM |
bodymap2_breast | 0 .00 RPM | 34 .24 RPM |
bodymap2_colon | 0 .00 RPM | 42 .54 RPM |
bodymap2_heart | 0 .00 RPM | 25 .85 RPM |
bodymap2_kidney | 0 .00 RPM | 59 .42 RPM |
bodymap2_liver | 0 .00 RPM | 19 .16 RPM |
bodymap2_lung | 0 .00 RPM | 28 .23 RPM |
bodymap2_lymph_node | 0 .00 RPM | 50 .45 RPM |
bodymap2_ovary | 0 .00 RPM | 33 .41 RPM |
bodymap2_prostate | 0 .00 RPM | 48 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .42 RPM |
bodymap2_testis | 0 .08 RPM | 47 .26 RPM |
bodymap2_thyroid | 0 .00 RPM | 42 .05 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 58 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_220 |
Gorilla gorilla | retro_ggor_309 |
Pongo abelii | retro_pabe_405 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006410 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020623 | 1 retrocopy | |
Homo sapiens | ENSG00000166847 | 1 retrocopy |
retro_hsap_260 ,
|
Gorilla gorilla | ENSGGOG00000012834 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007806 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012148 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030868 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012015 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007194 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018048 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |