RetrogeneDB ID: retro_mluc_140

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:12919177..12919726(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026033
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012148
• Aliases: None
• Description: None

Sequence

>retro_mluc_140
ATGGAGTTGGGCGAGCTGCTCTACAACAAGTCCGAGTACATCGAGTTGGCCTCTGGGAACAAAGTTAGTCGCCAGTCGGT
GTTGTGCGGAAGTCAGAACATCTTTCTCAATGGCAAGACCATTGTGATGAATGACTGTATTATCCGAGGGGATATGGCAA
ATGTAAGAGTTGGACGTCATTGTGTTGTGAAAAGTCGGAGTGTCATAAGGCCACCGTTCAAGAAATTCAGCAAAGGGGTT
GCATTCTTCCCTTTACATATTGGGGACCATGTTTTTATTGAGGAAGATTGTGTGGTCAACGCAGCTCAGATTGGTTCTTA
CGTTCATGTTGGCAAGAACTGTGTGATTGGGCGCCTGTGTGTGTTGAAAGACTGCTGCAAAATTCTTGACAACACAGTAC
TACCCCCAGAAACGGTGGTCCCACCATTCATTGTCTTCTCAGGCTGCCCAGGACTCTTCTCGGGGGAGCTTCCAGAATGT
ATCCAGGAGCTGATGATTGACGTCACCAAGAGCTACTACCAGAAGTTTTTGCCCTTGACTCAGGTCTAA

Alignment

ORF - retro_mluc_140 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.7 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIR
          MELGELLYNKSEYIE.ASGNKVSRQSVLCGSQNI.LNGKTIVMNDCIIRGD.ANVRVGRHCVVKSRSVIR
Retrocopy MELGELLYNKSEYIELASGNKVSRQSVLCGSQNIFLNGKTIVMNDCIIRGDMANVRVGRHCVVKSRSVIR

Parental  PPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVV
          PPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGR.CVLKDCCKILDNTVLPPETVV
Retrocopy PPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRLCVLKDCCKILDNTVLPPETVV

Parental  PPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
          PPF.VFSGCPGLFSGELPEC.QELMIDVTKSYYQKFLPLTQV
Retrocopy PPFIVFSGCPGLFSGELPECIQELMIDVTKSYYQKFLPLTQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_140 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006410	1 retrocopy	retro_btau_1203,
Callithrix jacchus	ENSCJAG00000020623	1 retrocopy	retro_cjac_1687,
Homo sapiens	ENSG00000166847	1 retrocopy	retro_hsap_260,
Gorilla gorilla	ENSGGOG00000012834	1 retrocopy	retro_ggor_309,
Microcebus murinus	ENSMICG00000007806	1 retrocopy	retro_mmur_1082,
Myotis lucifugus	ENSMLUG00000012148	1 retrocopy	retro_mluc_140 ,
Mus musculus	ENSMUSG00000030868	2 retrocopies	retro_mmus_2733, retro_mmus_625,
Nomascus leucogenys	ENSNLEG00000012015	1 retrocopy	retro_nleu_863,
Pongo abelii	ENSPPYG00000007194	2 retrocopies	retro_pabe_1729, retro_pabe_405,
Pan troglodytes	ENSPTRG00000007891	1 retrocopy	retro_ptro_220,
Rattus norvegicus	ENSRNOG00000018048	2 retrocopies	retro_rnor_1351, retro_rnor_1847,