RetrogeneDB ID: retro_nleu_863

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397275.1:18670104..18670647(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DCTN5
• Ensembl ID: ENSNLEG00000012015
• Aliases: None
• Description: None

Sequence

>retro_nleu_863
ATGGAGTTGGTTGAGCTGCTCTACAAGTCTGAGTACATCAAGACGGCATCTGGGAACAAAGTCAGTCTCCAGTCAGTGTT
GTGTGGAAGCCAGAACATAGTTCTCAATGGCAAGACCATTGTGATGAATGACTGTATTATCCGAGGGGATCTGGAAAACG
TAAGAGTTGGACGTCATTGTGTTGTGAAAAGTTGTGGTGTCATAAGGCCACCATTCAAGAAATTCAGCAAAAGTGTTGAA
TTATTTCCTTTACATATTGGGGATCATGTCTTTATTGAGGAAGAGTGTGTGGTCAACGCAGCTCAGATTGGTTCTTGCAT
TCATGTTGGCAAGAACTGTGTGATTGGGTGCCGGTGTTTGTTGAAAGACTGCTGCAAAATTCTTGACAACACAGCATTAC
CTCCAGAAACTGTGGTCCCACCATTCACTGTCTTCTCAGGCTGCCCAGGACGCTTCTCAGGAGATCTCCCAGAGTGCACT
CAGGAGCTGATGATTGATGTCACCAAGAGCTACTATCAGAAGTTTTTGGCCCTGACACAAGTC

Alignment

ORF - retro_nleu_863 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.56 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIR
          MEL.ELLY.KSEYI.TASGNKVS.QSVLCGSQNIVLNGKTIVMNDCIIRGDL.NVRVGRHCVVKS..VIR
Retrocopy MELVELLY-KSEYIKTASGNKVSLQSVLCGSQNIVLNGKTIVMNDCIIRGDLENVRVGRHCVVKSCGVIR

Parental  PPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVV
          PPFKKFSK.V..FPLHIGDHVFIEE.CVVNAAQIGS..HVGKNCVIG.RC.LKDCCKILDNT.LPPETVV
Retrocopy PPFKKFSKSVELFPLHIGDHVFIEEECVVNAAQIGSCIHVGKNCVIGCRCLLKDCCKILDNTALPPETVV

Parental  PPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
          PPFTVFSGCPG.FSG.LPECTQELMIDVTKSYYQKFL.LTQV
Retrocopy PPFTVFSGCPGRFSGDLPECTQELMIDVTKSYYQKFLALTQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_863 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006410	1 retrocopy	retro_btau_1203,
Callithrix jacchus	ENSCJAG00000020623	1 retrocopy	retro_cjac_1687,
Homo sapiens	ENSG00000166847	1 retrocopy	retro_hsap_260,
Gorilla gorilla	ENSGGOG00000012834	1 retrocopy	retro_ggor_309,
Microcebus murinus	ENSMICG00000007806	1 retrocopy	retro_mmur_1082,
Myotis lucifugus	ENSMLUG00000012148	1 retrocopy	retro_mluc_140,
Mus musculus	ENSMUSG00000030868	2 retrocopies	retro_mmus_2733, retro_mmus_625,
Nomascus leucogenys	ENSNLEG00000012015	1 retrocopy	retro_nleu_863 ,
Pongo abelii	ENSPPYG00000007194	2 retrocopies	retro_pabe_1729, retro_pabe_405,
Pan troglodytes	ENSPTRG00000007891	1 retrocopy	retro_ptro_220,
Rattus norvegicus	ENSRNOG00000018048	2 retrocopies	retro_rnor_1351, retro_rnor_1847,