RetrogeneDB ID: retro_mmur_1082

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_2076:32078..32621(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DCTN5
• Ensembl ID: ENSMICG00000007806
• Aliases: None
• Description: dynactin 5 (p25) [Source:HGNC Symbol;Acc:24594]

Sequence

>retro_mmur_1082
GAGTTGGGTGAGCTGCTCTACAACAAGTCCGAGTACATGGAGACGGCATCTGGGAACAAAGTTAGCTGCCAGTCAGAGCT
GTGTGGAAGCCAGAACATCGTTCTTAGAGGCAAGACCATTGTAATGAATGACTGCATTATCCGAGGGGATCTGGCAAATT
TAAGAGTTGGACGCCATTGTGTTGAGAAGAGTCGTAGTGTCATAAGGCCACCATTCAAGAAATTCAGTAAAGGCATTGCA
TTCTTTCCATTACATATTGGGGACCATGTCTTTATTGAGGAAGATTGTGTGGTCAACGCAGCTCAGATTGGTTCCTACGT
TCATGTTGGCAAGAACTGTGTGATTGGGCACCAGTGTGTGTTAAAAGACTGCTGCAAAATTCTTGACAACACAGTATTAC
CTCCAGAAACTGGGGTCCCACCATTCACTGTCTTCTCAGGCTGCCCAGGACTCTTCTCAGGGAAGCTTCCCGACTGTACT
CAGGAGCTGATGATCGACGTCACCAAGAGCTACTACCAGAAATTTTTGCCCCTGACACAAGTG

Alignment

ORF - retro_mmur_1082 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.37 %
• Parental protein coverage: 99.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRP
          ELGELLYNKSEY.ETASGNKVS.QS.LCGSQNIVL.GKTIVMNDCIIRGDLAN.RVGRHCV.KSRSVIRP
Retrocopy ELGELLYNKSEYMETASGNKVSCQSELCGSQNIVLRGKTIVMNDCIIRGDLANLRVGRHCVEKSRSVIRP

Parental  PFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPETVVP
          PFKKFSKG.AFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIG..CVLKDCCKILDNTVLPPET.VP
Retrocopy PFKKFSKGIAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGHQCVLKDCCKILDNTVLPPETGVP

Parental  PFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
          PFTVFSGCPGLFSG.LP.CTQELMIDVTKSYYQKFLPLTQV
Retrocopy PFTVFSGCPGLFSGKLPDCTQELMIDVTKSYYQKFLPLTQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1082 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1082 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006410	1 retrocopy	retro_btau_1203,
Callithrix jacchus	ENSCJAG00000020623	1 retrocopy	retro_cjac_1687,
Homo sapiens	ENSG00000166847	1 retrocopy	retro_hsap_260,
Gorilla gorilla	ENSGGOG00000012834	1 retrocopy	retro_ggor_309,
Microcebus murinus	ENSMICG00000007806	1 retrocopy	retro_mmur_1082 ,
Myotis lucifugus	ENSMLUG00000012148	1 retrocopy	retro_mluc_140,
Mus musculus	ENSMUSG00000030868	2 retrocopies	retro_mmus_2733, retro_mmus_625,
Nomascus leucogenys	ENSNLEG00000012015	1 retrocopy	retro_nleu_863,
Pongo abelii	ENSPPYG00000007194	2 retrocopies	retro_pabe_1729, retro_pabe_405,
Pan troglodytes	ENSPTRG00000007891	1 retrocopy	retro_ptro_220,
Rattus norvegicus	ENSRNOG00000018048	2 retrocopies	retro_rnor_1351, retro_rnor_1847,