RetrogeneDB ID: | retro_mmus_2733 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:53045883..53046430(+) | ||
Located in intron of: | ENSMUSG00000063568 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080759 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dctn5 | ||
Ensembl ID: | ENSMUSG00000030868 | ||
Aliases: | Dctn5, 4930427E12Rik, C78178 | ||
Description: | dynactin 5 [Source:MGI Symbol;Acc:MGI:1891689] |
Percent Identity: | 84.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MELGELLYNKSEYIETASGNKVSRQSVLCGS-QNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVI |
MELGELLYNKSEYIETASGNK....S..CG..QNI.LNGKTIIMNDCIIRG.LA.VRVG.HCVVKSRSVI | |
Retrocopy | MELGELLYNKSEYIETASGNKKLVASLFCGK>QNIFLNGKTIIMNDCIIRGELASVRVGCHCVVKSRSVI |
Parental | RPPFKK-FSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILDNTVLPPET |
RPPFKK.FSKGV.FFPLHIGDHVFIEEDCVVNAAQIGSYVHVG.NCV.G.RCVLKDCCKILDNTVLPPET | |
Retrocopy | RPPFKK>FSKGVTFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGRNCVTGCRCVLKDCCKILDNTVLPPET |
Parental | VVPPFTVFSGCPGL-FSGELPECTQELMIDVTKSYYQKFLPLTQV |
V.PPFT.FSGCPGL..SGELPE.TQEL..D.TKSY.QK.LPL.QV | |
Retrocopy | VFPPFTAFSGCPGL<LSGELPERTQELRSDLTKSYSQKLLPLAQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 62 .33 RPM |
SRP007412_cerebellum | 0 .04 RPM | 49 .59 RPM |
SRP007412_heart | 0 .00 RPM | 21 .57 RPM |
SRP007412_kidney | 0 .02 RPM | 38 .98 RPM |
SRP007412_liver | 0 .03 RPM | 19 .61 RPM |
SRP007412_testis | 0 .14 RPM | 24 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006410 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020623 | 1 retrocopy | |
Homo sapiens | ENSG00000166847 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012834 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007806 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012148 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030868 | 2 retrocopies |
retro_mmus_2733 , retro_mmus_625,
|
Nomascus leucogenys | ENSNLEG00000012015 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007194 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018048 | 2 retrocopies |