RetrogeneDB ID: | retro_hsap_2762 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:27744772..27745057(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232766 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1143 | ||
Ensembl ID: | ENSG00000163807 | ||
Aliases: | None | ||
Description: | KIAA1143 [Source:HGNC Symbol;Acc:29198] |
Percent Identity: | 82.29 % |
Parental protein coverage: | 62.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VRPAEPAFLARFKERVGYREGPTVETKRIQPQPPDEDGDHSDKEDEQPQVVVLKKGDLSVEEVMKIKAEI |
VRPAEPAFLARFKE.VGYRE.PTVETKRIQP..PDE.GDHSDK.DE.PQV...KKGDLSVEEVMKIKAE. | |
Retrocopy | VRPAEPAFLARFKEWVGYREEPTVETKRIQPHLPDENGDHSDK-DEEPQVMFFKKGDLSVEEVMKIKAEV |
Parental | KAAKADEEPTPADGRIIYRKPVKHPS |
KAAKAD.EP.PA.GRI.Y.KPVKH.S | |
Retrocopy | KAAKADKEPAPAEGRIMYQKPVKHQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 43 .59 RPM |
bodymap2_adrenal | 0 .00 RPM | 35 .99 RPM |
bodymap2_brain | 0 .00 RPM | 40 .86 RPM |
bodymap2_breast | 0 .00 RPM | 37 .57 RPM |
bodymap2_colon | 0 .00 RPM | 42 .23 RPM |
bodymap2_heart | 0 .00 RPM | 40 .21 RPM |
bodymap2_kidney | 0 .00 RPM | 29 .61 RPM |
bodymap2_liver | 0 .00 RPM | 11 .26 RPM |
bodymap2_lung | 0 .00 RPM | 24 .98 RPM |
bodymap2_lymph_node | 0 .00 RPM | 32 .64 RPM |
bodymap2_ovary | 0 .00 RPM | 62 .44 RPM |
bodymap2_prostate | 0 .00 RPM | 52 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 44 .34 RPM |
bodymap2_testis | 0 .00 RPM | 32 .86 RPM |
bodymap2_thyroid | 0 .00 RPM | 56 .91 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 71 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1869 |
Pongo abelii | retro_pabe_2250 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014132 | 1 retrocopy | |
Homo sapiens | ENSG00000163807 | 2 retrocopies |
retro_hsap_1399, retro_hsap_2762 ,
|
Nomascus leucogenys | ENSNLEG00000005987 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000929 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013954 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014824 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012438 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000011308 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010817 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |