RetrogeneDB ID:

retro_nleu_666

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397269.1:15955277..15955558(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KIAA1143
Ensembl ID:ENSNLEG00000005987
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_666
CGGCCAGCTGAGCCAGCATTCCTGGCTCGCTTCAAGGAATGGGTTGGCTATAAGAAGGAGCCCACCATAGAGACCAAGAG
AATCCAGCCTCATCTCCAGATGAAAATGGGGATCACAGTGACAAAGATGAAGAGCCTCAAGTGATGGTTTTTAAAAAGGG
AGACCTGTCAGTTGAAGAAGTCATGAAAATTAAAGCAGAAGTAAAGGCTGCCAAAGCAGATAAAGAACTAGCTCGAGCTG
AGGGAAGAATCACGTATCAAAAACCAGTGAAGCACCAGTCA

ORF - retro_nleu_666 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.04 %
Parental protein coverage: 61.69 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRPAEPAFLARFKERVGHREGPTVETKRIQPQ-PPDEDRDHSDKEDEQPQVVVLKKGDLSVEEVMKIKAEI
RPAEPAFLARFKE.VG....PT.ETKRIQP...PDE..DHSDK.DE.PQV.V.KKGDLSVEEVMKIKAE.
RetrocopyRPAEPAFLARFKEWVGYKKEPTIETKRIQPH<SPDENGDHSDK-DEEPQVMVFKKGDLSVEEVMKIKAEV
ParentalKAAKADEEPAPADGRIIYRKPVKHPS
KAAKAD.E.A.A.GRI.Y.KPVKH.S
RetrocopyKAAKADKELARAEGRITYQKPVKHQS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_666 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000141321 retrocopy
Homo sapiens ENSG000001638072 retrocopies
Nomascus leucogenys ENSNLEG00000005987 1 retrocopy
retro_nleu_666 ,
Oryctolagus cuniculus ENSOCUG000000009292 retrocopies
Pongo abelii ENSPPYG000000139541 retrocopy
Pan troglodytes ENSPTRG000000148241 retrocopy
Pteropus vampyrus ENSPVAG000000124382 retrocopies
Sus scrofa ENSSSCG000000113082 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000108171 retrocopy



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