RetrogeneDB ID: | retro_pvam_458 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3247:166741..167078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1143 | ||
Ensembl ID: | ENSPVAG00000012438 | ||
Aliases: | None | ||
Description: | KIAA1143 [Source:HGNC Symbol;Acc:29198] |
Percent Identity: | 70.09 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSKRNQVSYVRPAEPAFLA-RFKERVGY-REGPTVETKRIQPQLPDEDGDHSDKEDEQPQVVVLKKGDLS |
MSK.N.VS.V..AEPAFLA.R.....GY.RE.P...TKRI.PQL.D...DHSDKED.QPQ.V.LKKGDL. | |
Retrocopy | MSKWN*VSNVWLAEPAFLA<RLRGTAGY<REEPV--TKRI*PQLSDGNCDHSDKEDKQPQMVILKKGDL* |
Parental | AEEAMKIKAEIKAAKADEEPASADGRIMYRKPVKRSSDEKYSGLTAS |
.EE.MKIKAEIK.AKADEEPAS.DGR.M.RKPVK.S.D.KYSGLT.S | |
Retrocopy | VEEVMKIKAEIKTAKADEEPASVDGRAMCRKPVKHSQDKKYSGLTVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014132 | 1 retrocopy | |
Homo sapiens | ENSG00000163807 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005987 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000929 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013954 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014824 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012438 | 2 retrocopies |
retro_pvam_367, retro_pvam_458 ,
|
Sus scrofa | ENSSSCG00000011308 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010817 | 1 retrocopy |