RetrogeneDB ID: | retro_sscr_874 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:76870710..76871094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIAA1143 | ||
Ensembl ID: | ENSSSCG00000011308 | ||
Aliases: | None | ||
Description: | KIAA1143 [Source:HGNC Symbol;Acc:29198] |
Percent Identity: | 65.91 % |
Parental protein coverage: | 82.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSKRNQVSYVRPAEPAFLARFKERVGYREGPTIETKR-IQPQLPDEDADHSDKEDEQPQ-VVVLKKGDLS |
.SK.NQV.Y......AFLA.FKE.VG.REG...ETK..I.PQLPDED.DHSDKE......VVVLKK..LS | |
Retrocopy | ISKQNQVIYMGLVKSAFLACFKEWVGCREGTPEETKE<ILPQLPDEDGDHSDKENNTSK<VVVLKKRALS |
Parental | -EEVMKIKAEIKAAKADEEPASADGRIMYRKPVKRSSDEKYSGLTASS-KKKKTNEEDVINK |
.EEV.KIKAEIKAA.ADEEPASADGR..Y.KPVK..SDEKY.GLTASS.KK...N..D...K | |
Retrocopy | AEEVRKIKAEIKAARADEEPASADGRMLY*KPVKCCSDEKYLGLTASS<KKRR*NK*DLVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .59 RPM |
SRP014902_testis | 0 .00 RPM | 4 .38 RPM |
SRP018288_heart | 0 .00 RPM | 6 .94 RPM |
SRP018288_kidney | 0 .00 RPM | 5 .12 RPM |
SRP018288_liver | 0 .00 RPM | 2 .88 RPM |
SRP018288_lung | 0 .00 RPM | 2 .95 RPM |
SRP018856_adipose | 0 .00 RPM | 4 .34 RPM |
SRP035408_brain | 0 .00 RPM | 16 .83 RPM |
SRP035408_liver | 0 .00 RPM | 5 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014132 | 1 retrocopy | |
Homo sapiens | ENSG00000163807 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005987 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000929 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000013954 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014824 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012438 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000011308 | 2 retrocopies |
retro_sscr_844, retro_sscr_874 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000010817 | 1 retrocopy |