RetrogeneDB ID: | retro_hsap_3073 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:109709903..109710937(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250185 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RCC2 | ||
Ensembl ID: | ENSG00000179051 | ||
Aliases: | RCC2, TD-60 | ||
Description: | regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:30297] |
Percent Identity: | 86.78 % |
Parental protein coverage: | 66.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPA |
.KGQLGHGDTKRVEAPRLIEGLSH.VIVSAACG.NHTLAL.ETGSVFAFGENKMGQLGLGNQTD.V.SPA | |
Retrocopy | KKGQLGHGDTKRVEAPRLIEGLSHKVIVSAACGQNHTLALRETGSVFAFGENKMGQLGLGNQTDTVHSPA |
Parental | QIMYNGQPITKMACG-AEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFI |
QIMYNGQPITKMACG.AEFSMI.DC.GNL.SFGCPEYGQLGHNSDGKFIA..Q.IEYDC.LVP..VAIFI | |
Retrocopy | QIMYNGQPITKMACG>AEFSMIIDCRGNLCSFGCPEYGQLGHNSDGKFIAWPQQIEYDCKLVPLQVAIFI |
Parental | EKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVFS-WGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRG |
EKTK..Q.LPVPNVVV.DVA.G.NHTLVLDSQK.VFS.WG..GYG.LGHAEQKDEMVPRLVKLFDF.GRG | |
Retrocopy | EKTKN*QMLPVPNVVVQDVASGTNHTLVLDSQKQVFS<WGSSGYGWLGHAEQKDEMVPRLVKLFDFSGRG |
Parental | ASQIYAGYTCSFAVSEVGGLFFWGA-TNTSRESTMYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWG |
.SQIYAGYTC.FA.SEVGGLFFWG..TNTS.EST.YPKAVQDLCGWRIRSLACGKSSI.VA..ESTISWG | |
Retrocopy | VSQIYAGYTCFFAISEVGGLFFWGS<TNTSHESTVYPKAVQDLCGWRIRSLACGKSSITVATNESTISWG |
Parental | PSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESETEKEKIKKLPEYNPRTL |
PSPTFGE.GYGDHKPKSSTAAQEVKTLD.IFSEQVA.GYSH.LVIARD...TEKEKIKKLPEYNP.TL | |
Retrocopy | PSPTFGEHGYGDHKPKSSTAAQEVKTLDSIFSEQVAKGYSHTLVIARDKC*TEKEKIKKLPEYNPPTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 60 .11 RPM |
bodymap2_adrenal | 0 .00 RPM | 85 .62 RPM |
bodymap2_brain | 0 .02 RPM | 17 .13 RPM |
bodymap2_breast | 0 .00 RPM | 48 .89 RPM |
bodymap2_colon | 0 .00 RPM | 37 .09 RPM |
bodymap2_heart | 0 .00 RPM | 13 .98 RPM |
bodymap2_kidney | 0 .00 RPM | 32 .65 RPM |
bodymap2_liver | 0 .00 RPM | 10 .50 RPM |
bodymap2_lung | 0 .00 RPM | 56 .82 RPM |
bodymap2_lymph_node | 0 .00 RPM | 97 .87 RPM |
bodymap2_ovary | 0 .00 RPM | 76 .93 RPM |
bodymap2_prostate | 0 .00 RPM | 45 .29 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 12 .88 RPM |
bodymap2_testis | 0 .00 RPM | 65 .95 RPM |
bodymap2_thyroid | 0 .00 RPM | 40 .26 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 116 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2072 |
Gorilla gorilla | retro_ggor_2112 |
Pongo abelii | retro_pabe_2547 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001396 | 1 retrocopy | |
Homo sapiens | ENSG00000179051 | 3 retrocopies |
retro_hsap_2677, retro_hsap_3073 , retro_hsap_3597,
|
Gorilla gorilla | ENSGGOG00000015263 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007783 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000014544 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025834 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000247 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000006327 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |