RetrogeneDB ID: | retro_hsap_2677 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:96472030..96473010(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000241018 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RCC2 | ||
Ensembl ID: | ENSG00000179051 | ||
Aliases: | RCC2, TD-60 | ||
Description: | regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:30297] |
Percent Identity: | 63.25 % |
Parental protein coverage: | 62.64 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | RKKAAAAAWEEPSSGNGTARAGPRKRGGPAGRKRERPERCSSSSGGGSSGD-EDGLELDGAPGGGKRAAR |
RKKA.AA....P..GNG.A..GP....G.......R...C.SSSG..SS.D.EDGLEL..AP.G.....R | |
Retrocopy | RKKAGAAVCQKPP*GNGSALLGPGNEAGTSSKRHTRRKHCNSSSGKDSSNDLEDGLELHWAPSGD--GIR |
Parental | PATAGK-AGGAAVVITEPEHTKERVKLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLW-GP |
.A.AGK.AG..AVVIT.P..TKE..KLEGSK..GQLLI..A.NWDL.G.KEVPKQQ............GP | |
Retrocopy | HAAAGK>AGSVAVVITQPKYTKEHIKLEGSKYNGQLLI*RAVNWDLTG*KEVPKQQKLLTAISVRICEGP |
Parental | HRYGCL-AGVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAA |
...G.L.....V..VVSG.CAAHSLLIT.EGKLWS....EKG.LGH..TKR.EAPRLI.GLSHEVI..AA | |
Retrocopy | QICGYL<GSAQVWAVVSG*CAAHSLLITIEGKLWSCCGQEKGHLGHDNTKREEAPRLIKGLSHEVILPAA |
Parental | CGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIMDCKGNLYSF |
CG.NHTL.LTET.S.F.FGENKM..LG.GNQTDAV.S.AQ..Y.GQPITKM.CG.EFS.IMDCKGNL.SF | |
Retrocopy | CGQNHTLTLTETSSLFTFGENKMA*LGRGNQTDAVHSLAQTRYKGQPITKMTCGVEFSVIMDCKGNLFSF |
Parental | GCPEYGQLGHN-SDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPN |
GCPEYGQLG.N..DGKFI...Q..EY...LVP.R.A.FI.KTKDGQILPVPN | |
Retrocopy | GCPEYGQLGNN<LDGKFITPMQPLEYY*KLVPLRLAVFIQKTKDGQILPVPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 60 .11 RPM |
bodymap2_adrenal | 0 .00 RPM | 85 .62 RPM |
bodymap2_brain | 0 .00 RPM | 17 .13 RPM |
bodymap2_breast | 0 .00 RPM | 48 .89 RPM |
bodymap2_colon | 0 .00 RPM | 37 .09 RPM |
bodymap2_heart | 0 .00 RPM | 13 .98 RPM |
bodymap2_kidney | 0 .00 RPM | 32 .65 RPM |
bodymap2_liver | 0 .00 RPM | 10 .50 RPM |
bodymap2_lung | 0 .00 RPM | 56 .82 RPM |
bodymap2_lymph_node | 0 .00 RPM | 97 .87 RPM |
bodymap2_ovary | 0 .00 RPM | 76 .93 RPM |
bodymap2_prostate | 0 .00 RPM | 45 .29 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 12 .88 RPM |
bodymap2_testis | 0 .00 RPM | 65 .95 RPM |
bodymap2_thyroid | 0 .00 RPM | 40 .26 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 116 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1804 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001396 | 1 retrocopy | |
Homo sapiens | ENSG00000179051 | 3 retrocopies |
retro_hsap_2677 , retro_hsap_3073, retro_hsap_3597,
|
Gorilla gorilla | ENSGGOG00000015263 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007783 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000014544 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025834 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000247 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000006327 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |