RetrogeneDB ID: | retro_hsap_3128 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:182826944..182827620(-) | ||
Located in intron of: | ENSG00000177822 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000251433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNH | ||
Ensembl ID: | ENSG00000134480 | ||
Aliases: | CCNH, CAK, p34, p37 | ||
Description: | cyclin H [Source:HGNC Symbol;Acc:1594] |
Percent Identity: | 77.43 % |
Parental protein coverage: | 69.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQ-LNFHLIVHNPYRPF |
YH..IIMLTCAFLA.KVD..NVSSPQFVGNLRES.L.QE..LEQ.LEYEL..IQQ..NFHL.VHNPYRP. | |
Retrocopy | YHSWIIMLTCAFLAYKVDKLNVSSPQFVGNLRESSLVQEETLEQSLEYELPFIQQ>VNFHLTVHNPYRPL |
Parental | EGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLM |
E.FL.DLKT.Y..LENP.ILRKT.D..LNRI.L..AY.LYTPSQIAL.AILSSA.R.GIT.ESYL..SLM | |
Retrocopy | ECFLTDLKTYYAMLENPDILRKTDDELLNRITLMAAYCLYTPSQIALPAILSSAFRTGITTESYLLDSLM |
Parental | LKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKS |
L.ENRTCLS.L.DIMKSMRN.VKKY.PPRSEE.AVLK.KLE.CHSAELALNVI.KKRKG.ED.D..SKKS | |
Retrocopy | LRENRTCLSLLRDIMKSMRN*VKKYVPPRSEEAAVLKPKLEQCHSAELALNVIMKKRKGCEDNDDISKKS |
Parental | KHEEEEWTDDDLVESL |
.HEEEE.TDDDLV.SL | |
Retrocopy | RHEEEE*TDDDLVDSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 31 .88 RPM |
bodymap2_adrenal | 0 .00 RPM | 22 .86 RPM |
bodymap2_brain | 0 .00 RPM | 37 .74 RPM |
bodymap2_breast | 0 .00 RPM | 39 .44 RPM |
bodymap2_colon | 0 .00 RPM | 11 .56 RPM |
bodymap2_heart | 0 .00 RPM | 15 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 21 .65 RPM |
bodymap2_liver | 0 .00 RPM | 16 .75 RPM |
bodymap2_lung | 0 .00 RPM | 40 .82 RPM |
bodymap2_lymph_node | 0 .00 RPM | 14 .49 RPM |
bodymap2_ovary | 0 .00 RPM | 24 .35 RPM |
bodymap2_prostate | 0 .00 RPM | 26 .31 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 16 .73 RPM |
bodymap2_testis | 0 .00 RPM | 73 .32 RPM |
bodymap2_thyroid | 0 .00 RPM | 33 .78 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 21 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2116 |
Gorilla gorilla | retro_ggor_2143 |
Pongo abelii | retro_pabe_2584 |
Macaca mulatta | retro_mmul_1991 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007765 | 1 retrocopy | |
Homo sapiens | ENSG00000134480 | 1 retrocopy |
retro_hsap_3128 ,
|
Gorilla gorilla | ENSGGOG00000005172 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003248 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021548 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013604 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004659 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015619 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017063 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000659 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |