RetrogeneDB ID: | retro_mmul_1991 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:174019845..174020324(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNH | ||
Ensembl ID: | ENSMMUG00000003248 | ||
Aliases: | None | ||
Description: | cyclin-H [Source:RefSeq peptide;Acc:NP_001253375] |
Percent Identity: | 62.35 % |
Parental protein coverage: | 58.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PFEGFLIDLKTRYPMLENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES--YLS |
P.........T.Y.MLENP.ILRKT.D..LNRI.LT.AY.LYTPSQIAL.AILSSA.RAGITMES..... | |
Retrocopy | PIDHWSASSQTYYAMLENPDILRKTVDELLNRITLTAAYHLYTPSQIALPAILSSAFRAGITMES*LFIG |
Parental | ESLMLRENRTCLSQLLDIMKSMRNLVKK-YEPPRSEEVAVLKQKLERCHSAELALNVITKKRKG-YEDDD |
.S...RE....L............L.KK.Y.PPRSEE.AVLK.KLE.CHSAELALNVI.KKRKG..ED.D | |
Retrocopy | QSGFERE-QNLLVTVTRYNEKQEKLSKK>YVPPRSEETAVLKPKLEQCHSAELALNVIAKKRKG>VEDND |
Parental | YVSKKSKHEEEEWTDDDLVESL |
.VSKK...EEEE.TDDDLV.SL | |
Retrocopy | DVSKKYRQEEEE*TDDDLVDSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .83 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .78 RPM |
SRP007412_heart | 0 .00 RPM | 13 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .48 RPM |
SRP007412_liver | 0 .00 RPM | 10 .05 RPM |
SRP007412_testis | 0 .00 RPM | 52 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3128 |
Pan troglodytes | retro_ptro_2116 |
Gorilla gorilla | retro_ggor_2143 |
Pongo abelii | retro_pabe_2584 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007765 | 1 retrocopy | |
Homo sapiens | ENSG00000134480 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005172 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003248 | 1 retrocopy |
retro_mmul_1991 ,
|
Mus musculus | ENSMUSG00000021548 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013604 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004659 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015619 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017063 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000659 | 1 retrocopy |