RetrogeneDB ID: | retro_itri_856 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393333.1:4926341..4927059(-) | ||
Located in intron of: | ENSSTOG00000004318 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNH | ||
Ensembl ID: | ENSSTOG00000000659 | ||
Aliases: | None | ||
Description: | cyclin H [Source:HGNC Symbol;Acc:1594] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 74.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MYHNSSQKRHWTFASEEQLARLRADANRKFKCKVVANGK-VLPNDPVFLEPHEEMTLCKYYEK-RLLEFC |
.YHNSSQ.R.WTFA.EEQLA.L.A....KFKCKVVA.GK.V.PNDPVFLEPHEE.TLCKYYEK.RLLEFC | |
Retrocopy | IYHNSSQERRWTFATEEQLAHLQANTDHKFKCKVVAKGK<VFPNDPVFLEPHEERTLCKYYEK<RLLEFC |
Parental | SVFKPAMPRSVVGTACMYFKRF-YLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPVGQE |
SVFKPAMP.SVVGTACMYFKR....NNSVMEYHP.II.LTC.F.ACKVDEFNVSSPQFVGNL.E.P.GQ. | |
Retrocopy | SVFKPAMPWSVVGTACMYFKRSSFINNSVMEYHP*IILLTCSFWACKVDEFNVSSPQFVGNLLENPLGQK |
Parental | KALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEILRKTADDFLNRIALTDAYLLY |
KALEQILE.ELLLI.QLNFHLIVHN.YR.FE.FL.DIKT.YPMLENPEILRKTADD.LN.IALT.AYLLY | |
Retrocopy | KALEQILE*ELLLIKQLNFHLIVHNHYRQFECFLTDIKTHYPMLENPEILRKTADDSLNKIALTNAYLLY |
Parental | TPSQIALTAILSSASRAGIAMESYLSESLMLREN |
.PSQIALT.ILSSAS........Y..E....RE. | |
Retrocopy | IPSQIALTVILSSASTR*LLRDCY--EKVFIRES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007765 | 1 retrocopy | |
Homo sapiens | ENSG00000134480 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005172 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003248 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021548 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013604 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004659 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015619 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017063 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000659 | 1 retrocopy |
retro_itri_856 ,
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