RetrogeneDB ID: | retro_hsap_3224 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:102368079..102368732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000175749 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF3K | ||
Ensembl ID: | ENSG00000178982 | ||
Aliases: | EIF3K, EIF3-p28, EIF3S12, HSPC029, M9, MSTP001, PLAC-24, PLAC24, PRO1474, PTD001 | ||
Description: | eukaryotic translation initiation factor 3, subunit K [Source:HGNC Symbol;Acc:24656] |
Percent Identity: | 80.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQIL |
M..FEQMRANVG.LL.GI.R.NPE.LATLE.YVE.QAK..AYDLEAN..VLKLYQ.NP.FFQTT.TAQI. | |
Retrocopy | MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVFFQTTDTAQIQ |
Parental | LKALTNLPHTDFTLCKCMIDQAHQEERP-IRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVR |
LKALTNLPHT.FT.CKCMI.QAHQEE.P.I.QILYL.DLLET..FQAFW.ALDEN.DLLEGITGFEDSVR | |
Retrocopy | LKALTNLPHTNFTPCKCMIGQAHQEEWP<I*QILYLKDLLETSLFQAFWEALDENVDLLEGITGFEDSVR |
Parental | KFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDS |
..IC.VVGITYQHID.WLLAEM.G.LSDSQLKVWM.KY.W.ADES.QIFICSQEE.IKPKN.VEKIDFDS | |
Retrocopy | MCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDS |
Parental | VSSIMASSQ |
VSSIMA..Q | |
Retrocopy | VSSIMAFFQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 83 .71 RPM |
bodymap2_adrenal | 0 .41 RPM | 105 .01 RPM |
bodymap2_brain | 0 .02 RPM | 48 .61 RPM |
bodymap2_breast | 0 .06 RPM | 98 .35 RPM |
bodymap2_colon | 0 .00 RPM | 100 .64 RPM |
bodymap2_heart | 0 .09 RPM | 122 .05 RPM |
bodymap2_kidney | 0 .00 RPM | 110 .97 RPM |
bodymap2_liver | 0 .00 RPM | 59 .42 RPM |
bodymap2_lung | 0 .00 RPM | 96 .92 RPM |
bodymap2_lymph_node | 0 .00 RPM | 101 .75 RPM |
bodymap2_ovary | 0 .15 RPM | 77 .22 RPM |
bodymap2_prostate | 0 .00 RPM | 154 .32 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 119 .53 RPM |
bodymap2_testis | 0 .06 RPM | 50 .81 RPM |
bodymap2_thyroid | 0 .02 RPM | 69 .17 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 148 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2176 |
Gorilla gorilla | retro_ggor_2192 |
Pongo abelii | retro_pabe_2673 |
Macaca mulatta | retro_mmul_2029 |
Macaca mulatta | retro_mmul_2098 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000007594 | 3 retrocopies | |
Homo sapiens | ENSG00000178982 | 2 retrocopies |
retro_hsap_2616, retro_hsap_3224 ,
|
Gorilla gorilla | ENSGGOG00000016808 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010217 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000028767 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013314 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000026260 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000010934 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000005313 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007001 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .11 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .10 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |