RetrogeneDB ID: | retro_shar_689 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL857218.1:2953..3468(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF3K | ||
Ensembl ID: | ENSSHAG00000005313 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 3, subunit K [Source:HGNC Symbol;Acc:24656] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 78.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AVLKLYQFN-PAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEEQPIRQILYLGDLLETCHFQAF |
.VLKLYQFN.PAFFQT.VTAQILLKALTNLPHTDFTLCKCMIDQAH.EEQ..R.ILYL.DLL.TCHF.AF | |
Retrocopy | SVLKLYQFN<PAFFQTMVTAQILLKALTNLPHTDFTLCKCMIDQAHPEEQSMRHILYL*DLLKTCHF*AF |
Parental | WHALDENMDLLLLNGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDNQLKVWMSKYGWSSNEAG |
WHALDE.M.LLLLNGITGFEDSV.KFICH.V.I.YQH.D..LL..MLG.L.DNQLK.WMSKY.WSS.E.. | |
Retrocopy | WHALDEYMHLLLLNGITGFEDSVQKFICHMVSIMYQHVDHCLLDKMLGHLADNQLKAWMSKYDWSSSEIV |
Parental | QVFICSQEESIKPKNIVEKIDFESEQALRAKSQ |
Q.FICSQE..IKPKNIV.KI.FES.....A.SQ | |
Retrocopy | QIFICSQEKCIKPKNIVGKIHFESVSGIIASSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000007594 | 3 retrocopies | |
Homo sapiens | ENSG00000178982 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016808 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010217 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000028767 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013314 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000026260 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000010934 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020495 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000005313 | 1 retrocopy |
retro_shar_689 ,
|
Tarsius syrichta | ENSTSYG00000007001 | 1 retrocopy |