RetrogeneDB ID: | retro_hsap_3284 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:403848..404322(-) | ||
Located in intron of: | ENSG00000063438 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214278 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTIF3 | ||
Ensembl ID: | ENSG00000122033 | ||
Aliases: | MTIF3, IF3mt | ||
Description: | mitochondrial translational initiation factor 3 [Source:HGNC Symbol;Acc:29788] |
Percent Identity: | 77.22 % |
Parental protein coverage: | 56.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQ |
T....AE.QL.TG.Q..QER.RLRE.EK.NPK.GPTL..EL..SSN.GQHDLD.KTKQIQ.WIKKKH.V. | |
Retrocopy | TGSKAAEDQLVTGMQTHQERLRLRETEKGNPKPGPTLTTELTFSSNAGQHDLDAKTKQIQPWIKKKHQVR |
Parental | ITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRAFSKNEEKAYKETQETQER |
IT.KK..NVD.SEN..EEIFHQILQT.PGIATFSSRPQAVQGGKALM.VL...SK.EEKAY.ETQETQER | |
Retrocopy | ITVKKAENVDESENKVEEIFHQILQTVPGIATFSSRPQAVQGGKALMWVLCPLSKKEEKAYRETQETQER |
Parental | DTLNKDHGNDKESNVLHQ |
D.LNKDHGNDKESNVLHQ | |
Retrocopy | DPLNKDHGNDKESNVLHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 40 .25 RPM |
bodymap2_adrenal | 0 .00 RPM | 32 .63 RPM |
bodymap2_brain | 0 .00 RPM | 32 .37 RPM |
bodymap2_breast | 0 .00 RPM | 49 .75 RPM |
bodymap2_colon | 0 .00 RPM | 37 .07 RPM |
bodymap2_heart | 0 .00 RPM | 55 .96 RPM |
bodymap2_kidney | 0 .00 RPM | 50 .98 RPM |
bodymap2_liver | 0 .00 RPM | 20 .76 RPM |
bodymap2_lung | 0 .00 RPM | 14 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 30 .04 RPM |
bodymap2_ovary | 0 .00 RPM | 36 .09 RPM |
bodymap2_prostate | 0 .00 RPM | 26 .90 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 24 .14 RPM |
bodymap2_testis | 0 .43 RPM | 72 .90 RPM |
bodymap2_thyroid | 0 .00 RPM | 26 .82 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .29 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2221 |
Gorilla gorilla | retro_ggor_1318 |
Pongo abelii | retro_pabe_2713 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004404 | 1 retrocopy | |
Homo sapiens | ENSG00000122033 | 1 retrocopy |
retro_hsap_3284 ,
|
Gorilla gorilla | ENSGGOG00000008409 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000343 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011721 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005236 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012276 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .09 RPM |
CEU_NA11930 | 0 .13 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .12 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .11 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .27 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .09 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .17 RPM |
FIN_HG00349 | 0 .09 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .14 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .07 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .39 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .20 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .09 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .08 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .08 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .06 RPM |